The methods within the code package can be cited as:

  Young, M.D., Wakefield, M.J., Smyth, G.K., Oshlack, A., Gene ontology
  analysis for RNA-seq: accounting for selection bias, Genome Biology,
  11, 2, Feb 2010, R14

A BibTeX entry for LaTeX users is

  @Article{,
    title = {Gene ontology analysis for RNA-seq: accounting for selection bias},
    author = {Matthew D Young and Matthew J Wakefield and Gordon K Smyth and Alicia Oshlack},
    journal = {Genome Biology},
    volume = {11},
    pages = {R14},
    year = {2010},
  }

This free open-source software implements academic research by the
authors and co-workers. If you use it, please support the project by
citing the appropriate journal articles.