Getting started | Graphical comparisons of two sets of genes | How to set up the "end nodes"
Package: goTools 1.87.0
Agnes Paquet
goTools: Functions for Gene Ontology database
Wraper functions for description/comparison of oligo ID list using Gene Ontology database
Authors:
goTools_1.87.0.tar.gz
goTools_1.87.0.zip(r-4.7)goTools_1.87.0.zip(r-4.6)goTools_1.87.0.zip(r-4.5)
goTools_1.87.0.tgz(r-4.6-any)goTools_1.87.0.tgz(r-4.5-any)
goTools_1.87.0.tar.gz(r-4.7-any)goTools_1.87.0.tar.gz(r-4.6-any)
goTools_1.87.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
goTools/json (API)
| # Install 'goTools' in R: |
| install.packages('goTools', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- affylist - List of probe ids from Affymetrix hgu133a chip and Operon Version 2 Human oligos
- operonlist - List of probe ids from Affymetrix hgu133a chip and Operon Version 2 Human oligos
On BioConductor:goTools-1.87.0(bioc 3.24)goTools-1.86.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:fdadeec5b5. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 207 | ||
| linux-devel-x86_64 | NOTE | 238 | ||
| source / vignettes | OK | 208 | ||
| linux-release-x86_64 | NOTE | 263 | ||
| macos-release-arm64 | NOTE | 136 | ||
| macos-oldrel-arm64 | NOTE | 114 | ||
| windows-devel | NOTE | 162 | ||
| windows-release | NOTE | 173 | ||
| windows-oldrel | NOTE | 169 | ||
| wasm-release | OK | 141 |
Exports:CustomEndNodeListEndNodeListgetGOIDgetOntologygoChildrengoParentsisEndNodeontoCompareontoCompare.mainontoPlotparentsVectWraper
Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenericsglueGO.dbhttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslpkgconfigpngR6rlangRSQLiteS4VectorsSeqinfosysvctrsXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Reference GO nodes list. | CustomEndNodeList EndNodeList |
| Wrapper functions | ontoCompare ontoPlot |
| Internal goTools functions | getGOID getOntology goChildren goParents isEndNode ontoCompare.main parentsVectWraper |
| List of probe ids from Affymetrix hgu133a chip and Operon Version 2 Human oligos | affylist operonlist |
