Package: goTools 1.81.0
Agnes Paquet
goTools: Functions for Gene Ontology database
Wraper functions for description/comparison of oligo ID list using Gene Ontology database
Authors:
goTools_1.81.0.tar.gz
goTools_1.81.0.zip(r-4.5)goTools_1.81.0.zip(r-4.4)goTools_1.81.0.zip(r-4.3)
goTools_1.81.0.tgz(r-4.4-any)goTools_1.81.0.tgz(r-4.3-any)
goTools_1.81.0.tar.gz(r-4.5-noble)goTools_1.81.0.tar.gz(r-4.4-noble)
goTools_1.81.0.tgz(r-4.4-emscripten)goTools_1.81.0.tgz(r-4.3-emscripten)
goTools.pdf |goTools.html✨
goTools/json (API)
| # Install 'goTools' in R: |
| install.packages('goTools', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- affylist - List of probe ids from Affymetrix hgu133a chip and Operon Version 2 Human oligos
- operonlist - List of probe ids from Affymetrix hgu133a chip and Operon Version 2 Human oligos
On BioConductor:goTools-1.79.0(bioc 3.20)goTools-1.78.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 26 days agofrom:6659a1b0f1. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 30 2024 |
| R-4.5-win | NOTE | Oct 31 2024 |
| R-4.5-linux | NOTE | Oct 30 2024 |
| R-4.4-win | NOTE | Oct 31 2024 |
| R-4.4-mac | NOTE | Oct 31 2024 |
| R-4.3-win | NOTE | Oct 31 2024 |
| R-4.3-mac | NOTE | Oct 31 2024 |
Exports:CustomEndNodeListEndNodeListgetGOIDgetOntologygoChildrengoParentsisEndNodeontoCompareontoCompare.mainontoPlotparentsVectWraper
Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapGenomeInfoDbGenomeInfoDbDataglueGO.dbhttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslpkgconfigplogrpngR6rlangRSQLiteS4VectorssysUCSC.utilsvctrsXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Reference GO nodes list. | CustomEndNodeList EndNodeList |
| Wrapper functions | ontoCompare ontoPlot |
| Internal goTools functions | getGOID getOntology goChildren goParents isEndNode ontoCompare.main parentsVectWraper |
| List of probe ids from Affymetrix hgu133a chip and Operon Version 2 Human oligos | affylist operonlist |
