Package: goTools 1.81.0

Agnes Paquet

goTools: Functions for Gene Ontology database

Wraper functions for description/comparison of oligo ID list using Gene Ontology database

Authors:Yee Hwa Yang <[email protected]>, Agnes Paquet <[email protected]>

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goTools.pdf |goTools.html✨
goTools/json (API)

# Install 'goTools' in R:
install.packages('goTools', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • affylist - List of probe ids from Affymetrix hgu133a chip and Operon Version 2 Human oligos
  • operonlist - List of probe ids from Affymetrix hgu133a chip and Operon Version 2 Human oligos

On BioConductor:goTools-1.81.0(bioc 3.21)goTools-1.80.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarraygovisualization

3.30 score 1 scripts 379 downloads 11 exports 39 dependencies

Last updated 5 months agofrom:6659a1b0f1. Checks:1 OK, 8 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 29 2025
R-4.5-winNOTEMar 29 2025
R-4.5-macNOTEMar 29 2025
R-4.5-linuxNOTEMar 29 2025
R-4.4-winNOTEMar 29 2025
R-4.4-macNOTEMar 29 2025
R-4.4-linuxNOTEMar 29 2025
R-4.3-winNOTEMar 29 2025
R-4.3-macNOTEMar 29 2025

Exports:CustomEndNodeListEndNodeListgetGOIDgetOntologygoChildrengoParentsisEndNodeontoCompareontoCompare.mainontoPlotparentsVectWraper

Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenericsGenomeInfoDbGenomeInfoDbDataglueGO.dbhttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslpkgconfigplogrpngR6rlangRSQLiteS4VectorssysUCSC.utilsvctrsXVector

goTools overview

Rendered fromgoTools.Rnwusingutils::Sweaveon Mar 29 2025.

Last update: 2013-11-01
Started: 2013-11-01

Readme and manuals

Help Manual

Help pageTopics
Reference GO nodes list.CustomEndNodeList EndNodeList
Wrapper functionsontoCompare ontoPlot
Internal goTools functionsgetGOID getOntology goChildren goParents isEndNode ontoCompare.main parentsVectWraper
List of probe ids from Affymetrix hgu133a chip and Operon Version 2 Human oligosaffylist operonlist