Package: ginmappeR 1.1.2

Fernando Sola

ginmappeR: Gene Identifier Mapper

Provides functionalities to translate gene or protein identifiers between state-of-art biological databases: CARD (<https://card.mcmaster.ca/>), NCBI Protein, Nucleotide and Gene (<https://www.ncbi.nlm.nih.gov/>), UniProt (<https://www.uniprot.org/>) and KEGG (<https://www.kegg.jp>). Also offers complementary functionality like NCBI identical proteins or UniProt similar genes clusters retrieval.

Authors:Fernando Sola [aut, cre], Daniel Ayala [aut], Marina Pulido [aut], Rafael Ayala [aut], Lorena López-Cerero [aut], Inma Hernández [aut], David Ruiz [aut]

ginmappeR_1.1.2.tar.gz
ginmappeR_1.1.2.zip(r-4.5)ginmappeR_1.1.2.zip(r-4.4)ginmappeR_1.1.2.zip(r-4.3)
ginmappeR_1.1.2.tgz(r-4.4-any)ginmappeR_1.1.2.tgz(r-4.3-any)
ginmappeR_1.1.2.tar.gz(r-4.5-noble)ginmappeR_1.1.2.tar.gz(r-4.4-noble)
ginmappeR_1.1.2.tgz(r-4.4-emscripten)ginmappeR_1.1.2.tgz(r-4.3-emscripten)
ginmappeR.pdf |ginmappeR.html✨
ginmappeR/json (API)

Peer review:

On BioConductor:ginmappeR-1.1.1(bioc 3.20)ginmappeR-1.0.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

34 exports 1.45 score 64 dependencies

Last updated 16 days agofrom:40d62d8876

Exports:changeCARDPathgetCARD2KEGGgetCARD2NCBIGenegetCARD2NCBINucleotidegetCARD2NCBIProteingetCARD2UniProtgetKEGG2CARDgetKEGG2NCBIGenegetKEGG2NCBINucleotidegetKEGG2NCBIProteingetKEGG2UniProtgetNCBIGene2CARDgetNCBIGene2KEGGgetNCBIGene2NCBINucleotidegetNCBIGene2NCBIProteingetNCBIGene2UniProtgetNCBIIdenticalProteinsgetNCBINucleotide2CARDgetNCBINucleotide2KEGGgetNCBINucleotide2NCBIGenegetNCBINucleotide2NCBIProteingetNCBINucleotide2UniProtgetNCBIProtein2CARDgetNCBIProtein2KEGGgetNCBIProtein2NCBIGenegetNCBIProtein2NCBINucleotidegetNCBIProtein2UniProtgetUniProt2CARDgetUniProt2KEGGgetUniProt2NCBIGenegetUniProt2NCBINucleotidegetUniProt2NCBIProteingetUniProtSimilarGenesupdateCARDDataBase

Dependencies:AnnotationDbiaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdigestdplyrfansifastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDatagluehmshttpcachehttrIRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigplogrpngprettyunitsprogresspurrrR6rentrezrjsonconsrlangRSQLiteS4VectorsstringistringrsystibbletidyrtidyselectUCSC.utilsUniProt.wsutf8vctrswithrXMLXVectorzlibbioc