Abstract | Introduction | Software features | Example | Identifier translation | NCBI identical protein retrieval | UniProt similar genes clusters | References
Package: ginmappeR 1.9.0
Fernando Sola
ginmappeR: Gene Identifier Mapper
Provides functionalities to translate gene or protein identifiers between state-of-art biological databases: CARD (<https://card.mcmaster.ca/>), NCBI Protein, Nucleotide and Gene (<https://www.ncbi.nlm.nih.gov/>), UniProt (<https://www.uniprot.org/>) and KEGG (<https://www.kegg.jp>). Also offers complementary functionality like NCBI identical proteins or UniProt similar genes clusters retrieval.
Authors:
ginmappeR_1.9.0.tar.gz
ginmappeR_1.9.0.zip(r-4.7)ginmappeR_1.9.0.zip(r-4.6)ginmappeR_1.9.0.zip(r-4.5)
ginmappeR_1.9.0.tgz(r-4.6-any)ginmappeR_1.9.0.tgz(r-4.5-any)
ginmappeR_1.9.0.tar.gz(r-4.7-any)ginmappeR_1.9.0.tar.gz(r-4.6-any)
ginmappeR_1.9.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ginmappeR/json (API)
| # Install 'ginmappeR' in R: |
| install.packages('ginmappeR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:ginmappeR-1.9.0(bioc 3.24)ginmappeR-1.8.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
annotationkegggeneticsthirdpartyclientsoftware
Last updated from:1d391948b9. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 181 | ||
| linux-devel-x86_64 | NOTE | 429 | ||
| source / vignettes | OK | 331 | ||
| linux-release-x86_64 | NOTE | 501 | ||
| macos-release-arm64 | NOTE | 344 | ||
| macos-oldrel-arm64 | NOTE | 337 | ||
| windows-devel | NOTE | 354 | ||
| windows-release | NOTE | 355 | ||
| windows-oldrel | NOTE | 343 | ||
| wasm-release | OK | 142 |
Exports:changeCARDPathgetCARD2KEGGgetCARD2NCBIGenegetCARD2NCBINucleotidegetCARD2NCBIProteingetCARD2UniProtgetCARDVersiongetKEGG2CARDgetKEGG2NCBIGenegetKEGG2NCBINucleotidegetKEGG2NCBIProteingetKEGG2UniProtgetKEGGVersiongetNCBIGene2CARDgetNCBIGene2KEGGgetNCBIGene2NCBINucleotidegetNCBIGene2NCBIProteingetNCBIGene2UniProtgetNCBIIdenticalProteinsgetNCBINucleotide2CARDgetNCBINucleotide2KEGGgetNCBINucleotide2NCBIGenegetNCBINucleotide2NCBIProteingetNCBINucleotide2UniProtgetNCBIProtein2CARDgetNCBIProtein2KEGGgetNCBIProtein2NCBIGenegetNCBIProtein2NCBINucleotidegetNCBIProtein2UniProtgetNCBIVersiongetUniProt2CARDgetUniProt2KEGGgetUniProt2NCBIGenegetUniProt2NCBINucleotidegetUniProt2NCBIProteingetUniProtSimilarGenesgetUniProtVersionupdateCARDDataBase
Dependencies:AnnotationDbiaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrfastmapfilelockgenericsgluehmshttrhttr2IRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigpngprettyunitsprogresspurrrR6rappdirsrentrezrjsonconsrlangRSQLitervestS4VectorsselectrSeqinfostringistringrsystibbletidyrtidyselectUniProt.wsutf8vctrswithrXMLxml2XVector
