Package: ginmappeR 1.9.0

Fernando Sola

ginmappeR: Gene Identifier Mapper

Provides functionalities to translate gene or protein identifiers between state-of-art biological databases: CARD (<https://card.mcmaster.ca/>), NCBI Protein, Nucleotide and Gene (<https://www.ncbi.nlm.nih.gov/>), UniProt (<https://www.uniprot.org/>) and KEGG (<https://www.kegg.jp>). Also offers complementary functionality like NCBI identical proteins or UniProt similar genes clusters retrieval.

Authors:Fernando Sola [aut, cre], Daniel Ayala [aut], Marina Pulido [aut], Rafael Ayala [aut], Lorena López-Cerero [aut], Inma Hernández [aut], David Ruiz [aut]

ginmappeR_1.9.0.tar.gz
ginmappeR_1.9.0.zip(r-4.7)ginmappeR_1.9.0.zip(r-4.6)ginmappeR_1.9.0.zip(r-4.5)
ginmappeR_1.9.0.tgz(r-4.6-any)ginmappeR_1.9.0.tgz(r-4.5-any)
ginmappeR_1.9.0.tar.gz(r-4.7-any)ginmappeR_1.9.0.tar.gz(r-4.6-any)
ginmappeR_1.9.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ginmappeR/json (API)
NEWS

# Install 'ginmappeR' in R:
install.packages('ginmappeR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:ginmappeR-1.9.0(bioc 3.24)ginmappeR-1.8.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

annotationkegggeneticsthirdpartyclientsoftware

4.32 score 21 scripts 234 downloads 38 exports 62 dependencies

Last updated from:1d391948b9. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR161
linux-devel-x86_64NOTE437
source / vignettesOK285
linux-release-x86_64NOTE473
macos-release-arm64NOTE357
macos-oldrel-arm64NOTE346
windows-develNOTE352
windows-releaseNOTE366
windows-oldrelNOTE358
wasm-releaseOK139

Exports:changeCARDPathgetCARD2KEGGgetCARD2NCBIGenegetCARD2NCBINucleotidegetCARD2NCBIProteingetCARD2UniProtgetCARDVersiongetKEGG2CARDgetKEGG2NCBIGenegetKEGG2NCBINucleotidegetKEGG2NCBIProteingetKEGG2UniProtgetKEGGVersiongetNCBIGene2CARDgetNCBIGene2KEGGgetNCBIGene2NCBINucleotidegetNCBIGene2NCBIProteingetNCBIGene2UniProtgetNCBIIdenticalProteinsgetNCBINucleotide2CARDgetNCBINucleotide2KEGGgetNCBINucleotide2NCBIGenegetNCBINucleotide2NCBIProteingetNCBINucleotide2UniProtgetNCBIProtein2CARDgetNCBIProtein2KEGGgetNCBIProtein2NCBIGenegetNCBIProtein2NCBINucleotidegetNCBIProtein2UniProtgetNCBIVersiongetUniProt2CARDgetUniProt2KEGGgetUniProt2NCBIGenegetUniProt2NCBINucleotidegetUniProt2NCBIProteingetUniProtSimilarGenesgetUniProtVersionupdateCARDDataBase

Dependencies:AnnotationDbiaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrfastmapfilelockgenericsgluehmshttrhttr2IRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigpngprettyunitsprogresspurrrR6rappdirsrentrezrjsonconsrlangRSQLitervestS4VectorsselectrSeqinfostringistringrsystibbletidyrtidyselectUniProt.wsutf8vctrswithrXMLxml2XVector

ginmappeR

Fernando Sola, Daniel Ayala, Marina Pulido, Rafael Ayala, Lorena López-Cerero, Inma Hernández, David Ruiz

Rendered fromginmappeR.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2024-03-21
Started: 2023-08-28

Readme and manuals

Help Manual

Help pageTopics
Change path to download CARD databasechangeCARDPath
Translates a CARD database ID to KEGG databasegetCARD2KEGG
Translates a CARD database ID to NCBI Gene databasegetCARD2NCBIGene
Translates a CARD database ID to NCBI Nucleotide databasegetCARD2NCBINucleotide
Translates a CARD database ID to NCBI Protein databasegetCARD2NCBIProtein
Translates a CARD database ID to UniProt databasegetCARD2UniProt
Prints CARD database version being usedgetCARDVersion
Translates a KEGG database ID to CARD databasegetKEGG2CARD
Translates a KEGG database ID to NCBI Gene databasegetKEGG2NCBIGene
Translates a KEGG database ID to NCBI Nucleotide databasegetKEGG2NCBINucleotide
Translates a KEGG database ID to NCBI Protein databasegetKEGG2NCBIProtein
Translates a KEGG Genes database ID to UniProt databasegetKEGG2UniProt
Prints KEGG database version being usedgetKEGGVersion
Translates a NCBI Gene database ID to CARD databasegetNCBIGene2CARD
Translates a NCBI Gene database ID to KEGG databasegetNCBIGene2KEGG
Translates a NCBI Gene database ID to NCBI Nucleotide databasegetNCBIGene2NCBINucleotide
Translates a NCBI Gene database ID to NCBI Protein databasegetNCBIGene2NCBIProtein
Translates a NCBI Gene database ID to UniProt databasegetNCBIGene2UniProt
Search NCBI Identical Protein database by a given NCBI IDgetNCBIIdenticalProteins
Translates a NCBI Nucleotide database ID to CARD databasegetNCBINucleotide2CARD
Translates a NCBI Nucleotide database ID to KEGG databasegetNCBINucleotide2KEGG
Translates a NCBI Nucleotide database ID to NCBI Gene databasegetNCBINucleotide2NCBIGene
Translates a NCBI Nucleotide database ID to NCBI Protein databasegetNCBINucleotide2NCBIProtein
Translates a NCBI Nucleotide database ID to UniProt databasegetNCBINucleotide2UniProt
Translates a NCBI Protein database ID to CARD databasegetNCBIProtein2CARD
Translates a NCBI Protein database ID to KEGG databasegetNCBIProtein2KEGG
Translates a NCBI Protein database ID to NCBI Gene databasegetNCBIProtein2NCBIGene
Translates a NCBI Protein database ID to NCBI Nucleotide databasegetNCBIProtein2NCBINucleotide
Translates a NCBI Protein database ID to UniProt databasegetNCBIProtein2UniProt
Prints NCBI databases versions being usedgetNCBIVersion
Translates an UniProt database ID to CARD databasegetUniProt2CARD
Translates an UniProt database ID to KEGG databasegetUniProt2KEGG
Translates an UniProt database ID to NCBI Gene databasegetUniProt2NCBIGene
Translates an UniProt database ID to NCBI Nucleotide databasegetUniProt2NCBINucleotide
Translates an UniProt database ID to NCBI Protein databasegetUniProt2NCBIProtein
Get similar UniProt genes by a given identity percentagegetUniProtSimilarGenes
Prints UniProt database version being usedgetUniProtVersion
Downloads the most up-to-date version of CARD databaseupdateCARDDataBase