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"Title": "Gene Identifier Mapper",
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"Description": "Provides functionalities to translate gene or protein\nidentifiers between state-of-art biological databases: CARD\n(), NCBI Protein, Nucleotide and\nGene (), UniProt\n() and KEGG ().\nAlso offers complementary functionality like NCBI identical\nproteins or UniProt similar genes clusters retrieval.",
"License": "GPL-3 + file LICENSE",
"Encoding": "UTF-8",
"VignetteBuilder": "knitr",
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"User": "root"
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"Author": "Fernando Sola [aut, cre] (ORCID:\n),\nDaniel Ayala [aut] (ORCID: ),\nMarina Pulido [aut] (ORCID: ),\nRafael Ayala [aut] (ORCID: ),\nLorena López-Cerero [aut] (ORCID:\n),\nInma Hernández [aut] (ORCID: ),\nDavid Ruiz [aut] (ORCID: )",
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"type": "organization",
"name": "Bioconductor",
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"getCARD2KEGG",
"getCARD2NCBIGene",
"getCARD2NCBINucleotide",
"getCARD2NCBIProtein",
"getCARD2UniProt",
"getCARDVersion",
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"getKEGG2NCBIGene",
"getKEGG2NCBINucleotide",
"getKEGG2NCBIProtein",
"getKEGG2UniProt",
"getKEGGVersion",
"getNCBIGene2CARD",
"getNCBIGene2KEGG",
"getNCBIGene2NCBINucleotide",
"getNCBIGene2NCBIProtein",
"getNCBIGene2UniProt",
"getNCBIIdenticalProteins",
"getNCBINucleotide2CARD",
"getNCBINucleotide2KEGG",
"getNCBINucleotide2NCBIGene",
"getNCBINucleotide2NCBIProtein",
"getNCBINucleotide2UniProt",
"getNCBIProtein2CARD",
"getNCBIProtein2KEGG",
"getNCBIProtein2NCBIGene",
"getNCBIProtein2NCBINucleotide",
"getNCBIProtein2UniProt",
"getNCBIVersion",
"getUniProt2CARD",
"getUniProt2KEGG",
"getUniProt2NCBIGene",
"getUniProt2NCBINucleotide",
"getUniProt2NCBIProtein",
"getUniProtSimilarGenes",
"getUniProtVersion",
"updateCARDDataBase"
],
"_help": [
{
"page": "changeCARDPath",
"title": "Change path to download CARD database",
"topics": [
"changeCARDPath"
]
},
{
"page": "getCARD2KEGG",
"title": "Translates a CARD database ID to KEGG database",
"topics": [
"getCARD2KEGG"
]
},
{
"page": "getCARD2NCBIGene",
"title": "Translates a CARD database ID to NCBI Gene database",
"topics": [
"getCARD2NCBIGene"
]
},
{
"page": "getCARD2NCBINucleotide",
"title": "Translates a CARD database ID to NCBI Nucleotide database",
"topics": [
"getCARD2NCBINucleotide"
]
},
{
"page": "getCARD2NCBIProtein",
"title": "Translates a CARD database ID to NCBI Protein database",
"topics": [
"getCARD2NCBIProtein"
]
},
{
"page": "getCARD2UniProt",
"title": "Translates a CARD database ID to UniProt database",
"topics": [
"getCARD2UniProt"
]
},
{
"page": "getCARDVersion",
"title": "Prints CARD database version being used",
"topics": [
"getCARDVersion"
]
},
{
"page": "getKEGG2CARD",
"title": "Translates a KEGG database ID to CARD database",
"topics": [
"getKEGG2CARD"
]
},
{
"page": "getKEGG2NCBIGene",
"title": "Translates a KEGG database ID to NCBI Gene database",
"topics": [
"getKEGG2NCBIGene"
]
},
{
"page": "getKEGG2NCBINucleotide",
"title": "Translates a KEGG database ID to NCBI Nucleotide database",
"topics": [
"getKEGG2NCBINucleotide"
]
},
{
"page": "getKEGG2NCBIProtein",
"title": "Translates a KEGG database ID to NCBI Protein database",
"topics": [
"getKEGG2NCBIProtein"
]
},
{
"page": "getKEGG2UniProt",
"title": "Translates a KEGG Genes database ID to UniProt database",
"topics": [
"getKEGG2UniProt"
]
},
{
"page": "getKEGGVersion",
"title": "Prints KEGG database version being used",
"topics": [
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]
},
{
"page": "getNCBIGene2CARD",
"title": "Translates a NCBI Gene database ID to CARD database",
"topics": [
"getNCBIGene2CARD"
]
},
{
"page": "getNCBIGene2KEGG",
"title": "Translates a NCBI Gene database ID to KEGG database",
"topics": [
"getNCBIGene2KEGG"
]
},
{
"page": "getNCBIGene2NCBINucleotide",
"title": "Translates a NCBI Gene database ID to NCBI Nucleotide database",
"topics": [
"getNCBIGene2NCBINucleotide"
]
},
{
"page": "getNCBIGene2NCBIProtein",
"title": "Translates a NCBI Gene database ID to NCBI Protein database",
"topics": [
"getNCBIGene2NCBIProtein"
]
},
{
"page": "getNCBIGene2UniProt",
"title": "Translates a NCBI Gene database ID to UniProt database",
"topics": [
"getNCBIGene2UniProt"
]
},
{
"page": "getNCBIIdenticalProteins",
"title": "Search NCBI Identical Protein database by a given NCBI ID",
"topics": [
"getNCBIIdenticalProteins"
]
},
{
"page": "getNCBINucleotide2CARD",
"title": "Translates a NCBI Nucleotide database ID to CARD database",
"topics": [
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]
},
{
"page": "getNCBINucleotide2KEGG",
"title": "Translates a NCBI Nucleotide database ID to KEGG database",
"topics": [
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]
},
{
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"title": "Translates a NCBI Nucleotide database ID to NCBI Gene database",
"topics": [
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]
},
{
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"title": "Translates a NCBI Nucleotide database ID to NCBI Protein database",
"topics": [
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]
},
{
"page": "getNCBINucleotide2UniProt",
"title": "Translates a NCBI Nucleotide database ID to UniProt database",
"topics": [
"getNCBINucleotide2UniProt"
]
},
{
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"title": "Translates a NCBI Protein database ID to CARD database",
"topics": [
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]
},
{
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"title": "Translates a NCBI Protein database ID to KEGG database",
"topics": [
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]
},
{
"page": "getNCBIProtein2NCBIGene",
"title": "Translates a NCBI Protein database ID to NCBI Gene database",
"topics": [
"getNCBIProtein2NCBIGene"
]
},
{
"page": "getNCBIProtein2NCBINucleotide",
"title": "Translates a NCBI Protein database ID to NCBI Nucleotide database",
"topics": [
"getNCBIProtein2NCBINucleotide"
]
},
{
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"title": "Translates a NCBI Protein database ID to UniProt database",
"topics": [
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},
{
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"title": "Prints NCBI databases versions being used",
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]
},
{
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},
{
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{
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{
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{
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{
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},
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},
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}
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