Package: ggtreeExtra 1.17.0

Shuangbin Xu

ggtreeExtra: An R Package To Add Geometric Layers On Circular Or Other Layout Tree Of "ggtree"

'ggtreeExtra' extends the method for mapping and visualizing associated data on phylogenetic tree using 'ggtree'. These associated data can be presented on the external panels to circular layout, fan layout, or other rectangular layout tree built by 'ggtree' with the grammar of 'ggplot2'.

Authors:Shuangbin Xu [aut, cre], Guangchuang Yu [aut, ctb]

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ggtreeExtra.pdf |ggtreeExtra.html✨
ggtreeExtra/json (API)
NEWS

# Install 'ggtreeExtra' in R:
install.packages('ggtreeExtra', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yulab-smu/ggtreeextra/issues

On BioConductor:ggtreeExtra-1.17.0(bioc 3.21)ggtreeExtra-1.16.0(bioc 3.20)

softwarevisualizationphylogeneticsannotation

9.72 score 90 stars 3 packages 426 scripts 1.5k downloads 2 mentions 18 exports 52 dependencies

Last updated 4 months agofrom:5620083c59. Checks:5 OK, 3 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 16 2025
R-4.5-winNOTEFeb 16 2025
R-4.5-macNOTEFeb 16 2025
R-4.5-linuxNOTEFeb 16 2025
R-4.4-winOKFeb 16 2025
R-4.4-macOKFeb 16 2025
R-4.3-winOKFeb 16 2025
R-4.3-macOKFeb 16 2025

Exports:%>%fruit_plotgeom_fruitgeom_fruit_listggplot_addposition_dodgexposition_dodgex2position_identityxposition_jitterdodgexposition_jitterxposition_points_jitterxposition_points_sinaxposition_raincloudxposition_stackxPositionJitterdodgexPositionJitterxtd_filtertd_unnest

Dependencies:apeaplotclicolorspacecpp11digestdplyrfansifarverfsgenericsggfunggnewscaleggplot2ggplotifyggtreegluegridGraphicsgtableisobandjsonlitelabelinglatticelazyevallifecyclemagrittrMASSMatrixmgcvmunsellnlmepatchworkpillarpkgconfigpurrrR6RColorBrewerRcpprlangscalesstringistringrtibbletidyrtidyselecttidytreetreeioutf8vctrsviridisLitewithryulab.utils

ggtreeExtra

| Shuangbin Xu and GuangChuang Yu | School of Basic Medical Sciences, Southern Medical University

Rendered fromggtreeExtra.Rmdusingknitr::rmarkdownon Feb 16 2025.

Last update: 2022-07-07
Started: 2020-07-07