Package: ggtreeExtra 1.17.0

Shuangbin Xu

ggtreeExtra: An R Package To Add Geometric Layers On Circular Or Other Layout Tree Of "ggtree"

'ggtreeExtra' extends the method for mapping and visualizing associated data on phylogenetic tree using 'ggtree'. These associated data can be presented on the external panels to circular layout, fan layout, or other rectangular layout tree built by 'ggtree' with the grammar of 'ggplot2'.

Authors:Shuangbin Xu [aut, cre], Guangchuang Yu [aut, ctb]

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ggtreeExtra.pdf |ggtreeExtra.html✨
ggtreeExtra/json (API)
NEWS

# Install 'ggtreeExtra' in R:
install.packages('ggtreeExtra', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/yulab-smu/ggtreeextra/issues

On BioConductor:ggtreeExtra-1.17.0(bioc 3.21)ggtreeExtra-1.16.0(bioc 3.20)

softwarevisualizationphylogeneticsannotation

9.64 score 87 stars 2 packages 370 scripts 1.5k downloads 2 mentions 18 exports 52 dependencies

Last updated 23 days agofrom:5620083c59. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 18 2024
R-4.5-winNOTENov 18 2024
R-4.5-linuxNOTENov 18 2024
R-4.4-winOKNov 18 2024
R-4.4-macOKNov 18 2024
R-4.3-winOKNov 18 2024
R-4.3-macOKNov 18 2024

Exports:%>%fruit_plotgeom_fruitgeom_fruit_listggplot_addposition_dodgexposition_dodgex2position_identityxposition_jitterdodgexposition_jitterxposition_points_jitterxposition_points_sinaxposition_raincloudxposition_stackxPositionJitterdodgexPositionJitterxtd_filtertd_unnest

Dependencies:apeaplotclicolorspacecpp11digestdplyrfansifarverfsgenericsggfunggnewscaleggplot2ggplotifyggtreegluegridGraphicsgtableisobandjsonlitelabelinglatticelazyevallifecyclemagrittrMASSMatrixmgcvmunsellnlmepatchworkpillarpkgconfigpurrrR6RColorBrewerRcpprlangscalesstringistringrtibbletidyrtidyselecttidytreetreeioutf8vctrsviridisLitewithryulab.utils

ggtreeExtra

| Shuangbin Xu and GuangChuang Yu | School of Basic Medical Sciences, Southern Medical University

Rendered fromggtreeExtra.Rmdusingknitr::rmarkdownon Nov 18 2024.

Last update: 2022-07-07
Started: 2020-07-07