Package: ggtreeExtra 1.17.0

Shuangbin Xu

ggtreeExtra: An R Package To Add Geometric Layers On Circular Or Other Layout Tree Of "ggtree"

'ggtreeExtra' extends the method for mapping and visualizing associated data on phylogenetic tree using 'ggtree'. These associated data can be presented on the external panels to circular layout, fan layout, or other rectangular layout tree built by 'ggtree' with the grammar of 'ggplot2'.

Authors:Shuangbin Xu [aut, cre], Guangchuang Yu [aut, ctb]

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ggtreeExtra.pdf |ggtreeExtra.html✨
ggtreeExtra/json (API)
NEWS

# Install 'ggtreeExtra' in R:
install.packages('ggtreeExtra', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/yulab-smu/ggtreeextra/issues

On BioConductor:ggtreeExtra-1.17.0(bioc 3.21)ggtreeExtra-1.16.0(bioc 3.20)

softwarevisualizationphylogeneticsannotation

9.70 score 89 stars 3 packages 406 scripts 1.5k downloads 2 mentions 18 exports 52 dependencies

Last updated 3 months agofrom:5620083c59. Checks:5 OK, 2 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 17 2025
R-4.5-winNOTEJan 17 2025
R-4.5-linuxNOTEJan 17 2025
R-4.4-winOKJan 17 2025
R-4.4-macOKJan 17 2025
R-4.3-winOKJan 17 2025
R-4.3-macOKJan 17 2025

Exports:%>%fruit_plotgeom_fruitgeom_fruit_listggplot_addposition_dodgexposition_dodgex2position_identityxposition_jitterdodgexposition_jitterxposition_points_jitterxposition_points_sinaxposition_raincloudxposition_stackxPositionJitterdodgexPositionJitterxtd_filtertd_unnest

Dependencies:apeaplotclicolorspacecpp11digestdplyrfansifarverfsgenericsggfunggnewscaleggplot2ggplotifyggtreegluegridGraphicsgtableisobandjsonlitelabelinglatticelazyevallifecyclemagrittrMASSMatrixmgcvmunsellnlmepatchworkpillarpkgconfigpurrrR6RColorBrewerRcpprlangscalesstringistringrtibbletidyrtidyselecttidytreetreeioutf8vctrsviridisLitewithryulab.utils

ggtreeExtra

| Shuangbin Xu and GuangChuang Yu | School of Basic Medical Sciences, Southern Medical University

Rendered fromggtreeExtra.Rmdusingknitr::rmarkdownon Jan 17 2025.

Last update: 2022-07-07
Started: 2020-07-07