Package: ggtreeExtra 1.17.0

Shuangbin Xu

ggtreeExtra: An R Package To Add Geometric Layers On Circular Or Other Layout Tree Of "ggtree"

'ggtreeExtra' extends the method for mapping and visualizing associated data on phylogenetic tree using 'ggtree'. These associated data can be presented on the external panels to circular layout, fan layout, or other rectangular layout tree built by 'ggtree' with the grammar of 'ggplot2'.

Authors:Shuangbin Xu [aut, cre], Guangchuang Yu [aut, ctb]

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ggtreeExtra.pdf |ggtreeExtra.html✨
ggtreeExtra/json (API)
NEWS

# Install 'ggtreeExtra' in R:
install.packages('ggtreeExtra', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yulab-smu/ggtreeextra/issues

On BioConductor:ggtreeExtra-1.17.0(bioc 3.21)ggtreeExtra-1.16.0(bioc 3.20)

softwarevisualizationphylogeneticsannotation

9.55 score 91 stars 2 packages 426 scripts 1.5k downloads 2 mentions 18 exports 52 dependencies

Last updated 5 months agofrom:5620083c59. Checks:6 OK, 3 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 18 2025
R-4.5-winNOTEMar 18 2025
R-4.5-macNOTEMar 18 2025
R-4.5-linuxNOTEMar 18 2025
R-4.4-winOKMar 18 2025
R-4.4-macOKMar 18 2025
R-4.4-linuxOKMar 18 2025
R-4.3-winOKMar 18 2025
R-4.3-macOKMar 18 2025

Exports:%>%fruit_plotgeom_fruitgeom_fruit_listggplot_addposition_dodgexposition_dodgex2position_identityxposition_jitterdodgexposition_jitterxposition_points_jitterxposition_points_sinaxposition_raincloudxposition_stackxPositionJitterdodgexPositionJitterxtd_filtertd_unnest

Dependencies:apeaplotclicolorspacecpp11digestdplyrfansifarverfsgenericsggfunggnewscaleggplot2ggplotifyggtreegluegridGraphicsgtableisobandjsonlitelabelinglatticelazyevallifecyclemagrittrMASSMatrixmgcvmunsellnlmepatchworkpillarpkgconfigpurrrR6RColorBrewerRcpprlangscalesstringistringrtibbletidyrtidyselecttidytreetreeioutf8vctrsviridisLitewithryulab.utils

ggtreeExtra

| Shuangbin Xu and GuangChuang Yu | School of Basic Medical Sciences, Southern Medical University

Rendered fromggtreeExtra.Rmdusingknitr::rmarkdownon Mar 18 2025.

Last update: 2022-07-07
Started: 2020-07-07