Package: ggtreeExtra 1.23.1

Shuangbin Xu

ggtreeExtra: An R Package To Add Geometric Layers On Circular Or Other Layout Tree Of "ggtree"

'ggtreeExtra' extends the method for mapping and visualizing associated data on phylogenetic tree using 'ggtree'. These associated data can be presented on the external panels to circular layout, fan layout, or other rectangular layout tree built by 'ggtree' with the grammar of 'ggplot2'.

Authors:Shuangbin Xu [aut, cre], Guangchuang Yu [aut, ctb]

ggtreeExtra_1.23.1.tar.gz
ggtreeExtra_1.23.1.zip(r-4.7)ggtreeExtra_1.23.1.zip(r-4.6)ggtreeExtra_1.23.1.zip(r-4.5)
ggtreeExtra_1.23.1.tgz(r-4.6-any)ggtreeExtra_1.23.1.tgz(r-4.5-any)
ggtreeExtra_1.23.1.tar.gz(r-4.7-any)ggtreeExtra_1.23.1.tar.gz(r-4.6-any)
ggtreeExtra_1.23.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ggtreeExtra/json (API)
NEWS

# Install 'ggtreeExtra' in R:
install.packages('ggtreeExtra', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yulab-smu/ggtreeextra/issues

On BioConductor:ggtreeExtra-1.23.0(bioc 3.24)ggtreeExtra-1.22.0(bioc 3.23)

softwarevisualizationphylogeneticsannotation

10.60 score 98 stars 2 packages 684 scripts 2.2k downloads 2 mentions 18 exports 73 dependencies

Last updated from:b353b67109. Checks:1 ERROR, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR164
linux-devel-x86_64OK185
source / vignettesOK188
linux-release-x86_64OK215
macos-release-arm64OK102
macos-oldrel-arm64OK114
windows-develOK120
windows-releaseOK106
windows-oldrelOK114
wasm-releaseOK127

Exports:%>%fruit_plotgeom_fruitgeom_fruit_listggplot_addposition_dodgexposition_dodgex2position_identityxposition_jitterdodgexposition_jitterxposition_points_jitterxposition_points_sinaxposition_raincloudxposition_stackxPositionJitterdodgexPositionJitterxtd_filtertd_unnest

Dependencies:apeaplotbase64encbslibcachemclicpp11digestdplyrevaluatefarverfastmapfontawesomefontBitstreamVerafontLiberationfontquiverfsgdtoolsgenericsggfunggiraphggnewscaleggplot2ggplotifyggtreegluegridGraphicsgtablehighrhtmltoolshtmlwidgetsisobandjquerylibjsonliteknitrlabelinglatticelazyevallifecyclemagrittrMASSmemoisemimenlmepatchworkpillarpkgconfigpurrrR6rappdirsRColorBrewerRcpprlangrmarkdownS7sassscalesstringistringrsystemfontstibbletidyrtidyselecttidytreetinytextreeioutf8vctrsviridisLitewithrxfunyamlyulab.utils

ggtreeExtra

| Shuangbin Xu and GuangChuang Yu | School of Basic Medical Sciences, Southern Medical University

Rendered fromggtreeExtra.Rmdusingknitr::rmarkdownon Jun 04 2026.

Last update: 2025-08-11
Started: 2020-07-07