Package: ggtree 3.13.0

Guangchuang Yu

ggtree: an R package for visualization of tree and annotation data

'ggtree' extends the 'ggplot2' plotting system which implemented the grammar of graphics. 'ggtree' is designed for visualization and annotation of phylogenetic trees and other tree-like structures with their annotation data.

Authors:Guangchuang Yu [aut, cre, cph], Tommy Tsan-Yuk Lam [aut, ths], Shuangbin Xu [aut], Lin Li [ctb], Bradley Jones [ctb], Justin Silverman [ctb], Watal M. Iwasaki [ctb], Yonghe Xia [ctb], Ruizhu Huang [ctb]

ggtree_3.13.0.tar.gz
ggtree_3.13.0.zip(r-4.5)ggtree_3.13.0.zip(r-4.4)ggtree_3.13.0.zip(r-4.3)
ggtree_3.13.0.tgz(r-4.4-any)ggtree_3.13.0.tgz(r-4.3-any)
ggtree_3.13.0.tar.gz(r-4.5-noble)ggtree_3.13.0.tar.gz(r-4.4-noble)
ggtree_3.13.0.tgz(r-4.4-emscripten)ggtree_3.13.0.tgz(r-4.3-emscripten)
ggtree.pdf |ggtree.html✨
ggtree/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/yulab-smu/ggtree/issues

On BioConductor:ggtree-3.13.0(bioc 3.20)ggtree-3.12.0(bioc 3.19)

bioconductor-package

117 exports 6.33 score 53 dependencies 96 dependents 474 mentions

Last updated 2 months agofrom:fc02e5a920

Exports:%+>%%<%%<+%%>%add_colorbaraesarrowas.polytomycollapseDate2decimaldecimal2Dateexpandfacet_datafacet_labellerfacet_plotfacet_widthsflipfortifygeom_alinegeom_balancegeom_cladelabgeom_cladelabelgeom_cladelabel2geom_facetgeom_highlightgeom_hilightgeom_insetgeom_labelgeom_label2geom_motifgeom_nodelabgeom_nodelab2geom_nodepointgeom_pointgeom_point2geom_rangegeom_rootedgegeom_rootpointgeom_segment2geom_stripgeom_striplabgeom_taxalinkgeom_textgeom_text2geom_tiplabgeom_tiplab2geom_tippointgeom_treegeom_tree2geom_treescalegeom_zoom_cladeget_clade_positionget_heatmap_column_positionget_taxa_nameget.pathggdensitreeggexpandggplotggsaveggtreegheatmapgroupCladegroupOTUguide_legendgzoomhexpandidentifyinsetlabel_padlayout_circularlayout_dendrogramlayout_fanlayout_inward_circularlayout_rectangularmarginMRCAmsaplotmultiplotnodebarnodeidnodelabnodepieopen_treeplot_listrange_formatread.treerevtsrotaterotate_treertreescale_colorscale_color_manualscale_color_subtreescale_colour_manualscale_colour_subtreescale_fill_manualscale_x_continuousscale_x_ggtreescale_x_rangescaleCladeset_hilight_legendStatBalancetd_filtertd_mutatetd_unnestthemetheme_dendrogramtheme_insettheme_treetheme_tree2unitvexpandviewCladexlimxlim_expandxlim_treezoomClade

Dependencies:apeaplotcachemclicolorspacecpp11digestdplyrfansifarverfastmapfsgenericsggfunggplot2ggplotifygluegridGraphicsgtableisobandjsonlitelabelinglatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmunsellnlmepatchworkpillarpkgconfigpurrrR6RColorBrewerRcpprlangscalesstringistringrtibbletidyrtidyselecttidytreetreeioutf8vctrsviridisLitewithryulab.utils