# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "ggtree" in publications use:'
type: software
license: Artistic-2.0
title: 'ggtree: an R package for visualization of tree and annotation data'
version: 3.13.0
doi: 10.1201/9781003279242
abstract: '''ggtree'' extends the ''ggplot2'' plotting system which implemented the
  grammar of graphics. ''ggtree'' is designed for visualization and annotation of
  phylogenetic trees and other tree-like structures with their annotation data.'
authors:
- family-names: Yu
  given-names: Guangchuang
  email: guangchuangyu@gmail.com
  orcid: https://orcid.org/0000-0002-6485-8781
- family-names: Lam
  given-names: Tommy Tsan-Yuk
  email: tylam.tommy@gmail.com
- family-names: Xu
  given-names: Shuangbin
  email: xshuangbin@163.com
  orcid: https://orcid.org/0000-0003-3513-5362
preferred-citation:
  type: book
  title: Data Integration, Manipulation and Visualization of Phylogenetic Treess
  authors:
  - family-names: Yu
    given-names: Guangchuang
    email: guangchuangyu@gmail.com
    orcid: https://orcid.org/0000-0002-6485-8781
  publisher:
    name: Chapman and Hall/CRC
  year: '2022'
  edition: 1st edition
  doi: 10.1201/9781003279242
  url: https://www.amazon.com/Integration-Manipulation-Visualization-Phylogenetic-Computational-ebook/dp/B0B5NLZR1Z/
repository: https://bioc.r-universe.dev
repository-code: https://github.com/YuLab-SMU/ggtree
url: https://www.amazon.com/Integration-Manipulation-Visualization-Phylogenetic-Computational-ebook/dp/B0B5NLZR1Z/
date-released: '2014-12-03'
contact:
- family-names: Yu
  given-names: Guangchuang
  email: guangchuangyu@gmail.com
  orcid: https://orcid.org/0000-0002-6485-8781
references:
- type: article
  title: 'Ggtree: A serialized data object for visualization of a phylogenetic tree
    and annotation data'
  authors:
  - family-names: Xu
    given-names: Shuangbin
  - family-names: Li
    given-names: Lin
  - family-names: Luo
    given-names: Xiao
  - family-names: Chen
    given-names: Meijun
  - family-names: Tang
    given-names: Wenli
  - family-names: Zhan
    given-names: Li
  - family-names: Dai
    given-names: Zehan
  - name: Tommy T. Lam
  - family-names: Guan
    given-names: Yi
  - family-names: Yu
    given-names: Guangchuang
  year: '2022'
  journal: iMeta
  volume: '1'
  issue: '4'
  doi: 10.1002/imt2.56
  url: https://onlinelibrary.wiley.com/doi/full/10.1002/imt2.56
  start: e56
- type: article
  title: Using ggtree to Visualize Data on Tree-Like Structures
  authors:
  - family-names: Yu
    given-names: Guangchuang
  year: '2020'
  journal: Current Protocols in Bioinformatics
  volume: '69'
  issue: '1'
  url: https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.96
  doi: 10.1002/cpbi.96
  start: e96
- type: article
  title: Two methods for mapping and visualizing associated data on phylogeny using
    ggtree.
  authors:
  - family-names: Yu
    given-names: Guangchuang
  - family-names: Lam
    given-names: Tommy Tsan-Yuk
  - family-names: Zhu
    given-names: Huachen
  - family-names: Guan
    given-names: Yi
  year: '2018'
  journal: Molecular Biology and Evolution
  volume: '35'
  issue: '2'
  doi: 10.1093/molbev/msy194
  url: https://academic.oup.com/mbe/article/35/12/3041/5142656
  start: 3041-3043
- type: article
  title: 'ggtree: an R package for visualization and annotation of phylogenetic trees
    with their covariates and other associated data.'
  authors:
  - family-names: Yu
    given-names: Guangchuang
  - family-names: Smith
    given-names: David
  - family-names: Zhu
    given-names: Huachen
  - family-names: Guan
    given-names: Yi
  - family-names: Lam
    given-names: Tommy Tsan-Yuk
  year: '2017'
  journal: Methods in Ecology and Evolution
  volume: '8'
  issue: '1'
  doi: 10.1111/2041-210X.12628
  url: http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12628/abstract
  start: 28-36
identifiers:
- type: url
  value: http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12628