Package: ggseqalign 1.7.0
ggseqalign: Minimal Visualization of Sequence Alignments
Simple visualizations of alignments of DNA or AA sequences as well as arbitrary strings. Compatible with Biostrings and ggplot2. The plots are fully customizable using ggplot2 modifiers such as theme().
Authors:
ggseqalign_1.7.0.tar.gz
ggseqalign_1.7.0.zip(r-4.7)ggseqalign_1.7.0.zip(r-4.6)ggseqalign_1.7.0.zip(r-4.5)
ggseqalign_1.7.0.tgz(r-4.6-any)ggseqalign_1.7.0.tgz(r-4.5-any)
ggseqalign_1.7.0.tar.gz(r-4.7-any)ggseqalign_1.7.0.tar.gz(r-4.6-any)
ggseqalign_1.7.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ggseqalign/json (API)
NEWS
| # Install 'ggseqalign' in R: |
| install.packages('ggseqalign', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/simeross/ggseqalign/issues
On BioConductor:ggseqalign-1.7.0(bioc 3.24)ggseqalign-1.6.0(bioc 3.23)
alignmentmultiplesequencealignmentsoftwarevisualizationbioinformaticsggplot2-enhancementsminimalistic
Last updated from:74ce31beda. Checks:8 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 176 | ||
| linux-devel-x86_64 | NOTE | 301 | ||
| source / vignettes | OK | 265 | ||
| linux-release-x86_64 | NOTE | 278 | ||
| macos-release-arm64 | NOTE | 137 | ||
| macos-oldrel-arm64 | NOTE | 130 | ||
| windows-devel | NOTE | 152 | ||
| windows-release | NOTE | 160 | ||
| windows-oldrel | NOTE | 196 | ||
| wasm-release | OK | 143 |
Exports:alignment_tableplot_sequence_alignment
Dependencies:BiocGenericsBiostringsclicpp11crayondplyrfarvergenericsggplot2gluegtableIRangesisobandlabelinglifecyclemagrittrpillarpkgconfigpwalignR6RColorBrewerrlangS4VectorsS7scalesSeqinfotibbletidyselectutf8vctrsviridisLitewithrXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Alignment Table | alignment_table |
| Plot sequence alignment | plot_sequence_alignment |
