Package: ggseqalign 0.99.1

Simeon Lim Rossmann

ggseqalign: Minimal Visualization of Sequence Alignments

Simple visualizations of alignments of DNA or AA sequences as well as arbitrary strings. Compatible with Biostrings and ggplot2. The plots are fully customizable using ggplot2 modifiers such as theme().

Authors:Simeon Lim Rossmann [aut, cre]

ggseqalign_0.99.1.tar.gz
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ggseqalign.pdf |ggseqalign.html✨
ggseqalign/json (API)
NEWS

# Install 'ggseqalign' in R:

install.packages('ggseqalign', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/simeross/ggseqalign/issues

On BioConductor:ggseqalign-0.99.1(bioc 3.20)

bioconductor-package

2 exports 0.49 score 49 dependencies

Last updated 1 months agofrom:22f8c31c02

Exports:alignment_table plot_sequence_alignment

Dependencies:askpass BiocGenerics Biostrings cli colorspace crayon curl dplyr fansi farver generics GenomeInfoDb GenomeInfoDbData ggplot2 glue gtable httr IRanges isoband jsonlite labeling lattice lifecycle magrittr MASS Matrix mgcv mime munsell nlme openssl pillar pkgconfig pwalign R6 RColorBrewer rlang S4Vectors scales sys tibble tidyselect UCSC.utils utf8 vctrs viridisLite withr XVector zlibbioc

Quickstart Guide to ggseqalign

Simeon Lim Rossmann

Rendered fromggseqalign.Rmdusingknitr::rmarkdownon Jun 13 2024.

Last update: 2024-06-03
Started: 2024-05-09

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Alignment Table	alignment_table
Plot sequence alignment	plot_sequence_alignment