Package: ggseqalign 1.1.0
ggseqalign: Minimal Visualization of Sequence Alignments
Simple visualizations of alignments of DNA or AA sequences as well as arbitrary strings. Compatible with Biostrings and ggplot2. The plots are fully customizable using ggplot2 modifiers such as theme().
Authors:
ggseqalign_1.1.0.tar.gz
ggseqalign_1.1.0.zip(r-4.5)ggseqalign_1.1.0.zip(r-4.4)ggseqalign_0.99.1.zip(r-4.3)
ggseqalign_1.1.0.tgz(r-4.4-any)ggseqalign_0.99.1.tgz(r-4.3-any)
ggseqalign_1.1.0.tar.gz(r-4.5-noble)ggseqalign_1.1.0.tar.gz(r-4.4-noble)
ggseqalign_1.1.0.tgz(r-4.4-emscripten)ggseqalign_0.99.1.tgz(r-4.3-emscripten)
ggseqalign.pdf |ggseqalign.html✨
ggseqalign/json (API)
NEWS
# Install 'ggseqalign' in R: |
install.packages('ggseqalign', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/simeross/ggseqalign/issues
On BioConductor:ggseqalign-0.99.1(bioc 3.20)
alignmentmultiplesequencealignmentsoftwarevisualizationbioinformaticsggplot2-enhancementsminimalistic
Last updated 23 days agofrom:5e75de0d9e. Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 30 2024 |
R-4.5-win | NOTE | Oct 31 2024 |
R-4.5-linux | NOTE | Oct 30 2024 |
R-4.4-win | NOTE | Oct 31 2024 |
R-4.4-mac | NOTE | Oct 31 2024 |
R-4.3-win | NOTE | Sep 11 2024 |
R-4.3-mac | NOTE | Sep 11 2024 |
Exports:alignment_tableplot_sequence_alignment
Dependencies:askpassBiocGenericsBiostringsclicolorspacecrayoncurldplyrfansifarvergenericsGenomeInfoDbGenomeInfoDbDataggplot2gluegtablehttrIRangesisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmimemunsellnlmeopensslpillarpkgconfigpwalignR6RColorBrewerrlangS4VectorsscalessystibbletidyselectUCSC.utilsutf8vctrsviridisLitewithrXVectorzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Alignment Table | alignment_table |
Plot sequence alignment | plot_sequence_alignment |