Package: ggseqalign 1.1.0

Simeon Lim Rossmann

ggseqalign: Minimal Visualization of Sequence Alignments

Simple visualizations of alignments of DNA or AA sequences as well as arbitrary strings. Compatible with Biostrings and ggplot2. The plots are fully customizable using ggplot2 modifiers such as theme().

Authors:Simeon Lim Rossmann [aut, cre]

ggseqalign_1.1.0.tar.gz
ggseqalign_1.1.0.zip(r-4.5)ggseqalign_1.1.0.zip(r-4.4)ggseqalign_0.99.1.zip(r-4.3)
ggseqalign_1.1.0.tgz(r-4.4-any)ggseqalign_0.99.1.tgz(r-4.3-any)
ggseqalign_1.1.0.tar.gz(r-4.5-noble)ggseqalign_1.1.0.tar.gz(r-4.4-noble)
ggseqalign_1.1.0.tgz(r-4.4-emscripten)ggseqalign_0.99.1.tgz(r-4.3-emscripten)
ggseqalign.pdf |ggseqalign.html
ggseqalign/json (API)
NEWS

# Install 'ggseqalign' in R:
install.packages('ggseqalign', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/simeross/ggseqalign/issues

On BioConductor:ggseqalign-0.99.1(bioc 3.20)

alignmentmultiplesequencealignmentsoftwarevisualizationbioinformaticsggplot2-enhancementsminimalistic

4.40 score 134 downloads 2 exports 49 dependencies

Last updated 23 days agofrom:5e75de0d9e. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winNOTEOct 31 2024
R-4.5-linuxNOTEOct 30 2024
R-4.4-winNOTEOct 31 2024
R-4.4-macNOTEOct 31 2024
R-4.3-winNOTESep 11 2024
R-4.3-macNOTESep 11 2024

Exports:alignment_tableplot_sequence_alignment

Dependencies:askpassBiocGenericsBiostringsclicolorspacecrayoncurldplyrfansifarvergenericsGenomeInfoDbGenomeInfoDbDataggplot2gluegtablehttrIRangesisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmimemunsellnlmeopensslpillarpkgconfigpwalignR6RColorBrewerrlangS4VectorsscalessystibbletidyselectUCSC.utilsutf8vctrsviridisLitewithrXVectorzlibbioc

Quickstart Guide to ggseqalign

Rendered fromggseqalign.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2024-06-03
Started: 2024-05-09

Readme and manuals

Help Manual

Help pageTopics
Alignment Tablealignment_table
Plot sequence alignmentplot_sequence_alignment