Package: ggseqalign 1.7.0

Simeon Lim Rossmann

ggseqalign: Minimal Visualization of Sequence Alignments

Simple visualizations of alignments of DNA or AA sequences as well as arbitrary strings. Compatible with Biostrings and ggplot2. The plots are fully customizable using ggplot2 modifiers such as theme().

Authors:Simeon Lim Rossmann [aut, cre]

ggseqalign_1.7.0.tar.gz
ggseqalign_1.7.0.zip(r-4.7)ggseqalign_1.7.0.zip(r-4.6)ggseqalign_1.7.0.zip(r-4.5)
ggseqalign_1.7.0.tgz(r-4.6-any)ggseqalign_1.7.0.tgz(r-4.5-any)
ggseqalign_1.7.0.tar.gz(r-4.7-any)ggseqalign_1.7.0.tar.gz(r-4.6-any)
ggseqalign_1.7.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
ggseqalign/json (API)
NEWS

# Install 'ggseqalign' in R:
install.packages('ggseqalign', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/simeross/ggseqalign/issues

On BioConductor:ggseqalign-1.7.0(bioc 3.24)ggseqalign-1.6.0(bioc 3.23)

alignmentmultiplesequencealignmentsoftwarevisualizationbioinformaticsggplot2-enhancementsminimalistic

4.04 score 11 scripts 210 downloads 2 exports 33 dependencies

Last updated from:74ce31beda. Checks:8 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE176
linux-devel-x86_64NOTE301
source / vignettesOK265
linux-release-x86_64NOTE278
macos-release-arm64NOTE137
macos-oldrel-arm64NOTE130
windows-develNOTE152
windows-releaseNOTE160
windows-oldrelNOTE196
wasm-releaseOK143

Exports:alignment_tableplot_sequence_alignment

Dependencies:BiocGenericsBiostringsclicpp11crayondplyrfarvergenericsggplot2gluegtableIRangesisobandlabelinglifecyclemagrittrpillarpkgconfigpwalignR6RColorBrewerrlangS4VectorsS7scalesSeqinfotibbletidyselectutf8vctrsviridisLitewithrXVector

Quickstart Guide to ggseqalign

Rendered fromggseqalign.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2025-03-03
Started: 2024-05-09

Readme and manuals

Help Manual

Help pageTopics
Alignment Tablealignment_table
Plot sequence alignmentplot_sequence_alignment