Package: ggseqalign 1.1.0

Simeon Lim Rossmann

ggseqalign: Minimal Visualization of Sequence Alignments

Simple visualizations of alignments of DNA or AA sequences as well as arbitrary strings. Compatible with Biostrings and ggplot2. The plots are fully customizable using ggplot2 modifiers such as theme().

Authors:Simeon Lim Rossmann [aut, cre]

ggseqalign_1.1.0.tar.gz
ggseqalign_1.1.0.zip(r-4.5)ggseqalign_1.1.0.zip(r-4.4)
ggseqalign_1.1.0.tgz(r-4.4-any)
ggseqalign_1.1.0.tar.gz(r-4.5-noble)ggseqalign_1.1.0.tar.gz(r-4.4-noble)
ggseqalign_1.1.0.tgz(r-4.4-emscripten)
ggseqalign.pdf |ggseqalign.html✨
ggseqalign/json (API)
NEWS

# Install 'ggseqalign' in R:
install.packages('ggseqalign', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/simeross/ggseqalign/issues

On BioConductor:ggseqalign-1.1.0(bioc 3.21)ggseqalign-1.0.0(bioc 3.20)

alignmentmultiplesequencealignmentsoftwarevisualizationbioinformaticsggplot2-enhancementsminimalistic

4.40 score 118 downloads 2 exports 49 dependencies

Last updated 2 months agofrom:5e75de0d9e. Checks:OK: 1 NOTE: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 29 2024
R-4.5-winNOTENov 29 2024
R-4.5-linuxNOTENov 29 2024
R-4.4-winNOTENov 29 2024
R-4.4-macNOTENov 29 2024

Exports:alignment_tableplot_sequence_alignment

Dependencies:askpassBiocGenericsBiostringsclicolorspacecrayoncurldplyrfansifarvergenericsGenomeInfoDbGenomeInfoDbDataggplot2gluegtablehttrIRangesisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmimemunsellnlmeopensslpillarpkgconfigpwalignR6RColorBrewerrlangS4VectorsscalessystibbletidyselectUCSC.utilsutf8vctrsviridisLitewithrXVectorzlibbioc

Quickstart Guide to ggseqalign

Simeon Lim Rossmann

Rendered fromggseqalign.Rmdusingknitr::rmarkdownon Nov 29 2024.

Last update: 2024-06-03
Started: 2024-05-09

Readme and manuals

Help Manual

Help pageTopics
Alignment Tablealignment_table
Plot sequence alignmentplot_sequence_alignment