Package: ggseqalign 1.1.0

Simeon Lim Rossmann

ggseqalign: Minimal Visualization of Sequence Alignments

Simple visualizations of alignments of DNA or AA sequences as well as arbitrary strings. Compatible with Biostrings and ggplot2. The plots are fully customizable using ggplot2 modifiers such as theme().

Authors:Simeon Lim Rossmann [aut, cre]

ggseqalign_1.1.0.tar.gz
ggseqalign_1.1.0.zip(r-4.5)ggseqalign_1.1.0.zip(r-4.4)
ggseqalign_1.1.0.tgz(r-4.5-any)ggseqalign_1.1.0.tgz(r-4.4-any)
ggseqalign_1.1.0.tar.gz(r-4.5-noble)ggseqalign_1.1.0.tar.gz(r-4.4-noble)
ggseqalign_1.1.0.tgz(r-4.4-emscripten)
ggseqalign.pdf |ggseqalign.html
ggseqalign/json (API)
NEWS

# Install 'ggseqalign' in R:
install.packages('ggseqalign', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/simeross/ggseqalign/issues

On BioConductor:ggseqalign-1.1.0(bioc 3.21)ggseqalign-1.0.0(bioc 3.20)

alignmentmultiplesequencealignmentsoftwarevisualizationbioinformaticsggplot2-enhancementsminimalistic

4.40 score 119 downloads 2 exports 48 dependencies

Last updated 3 months agofrom:5e75de0d9e. Checks:1 OK, 5 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 28 2025
R-4.5-winNOTEJan 28 2025
R-4.5-macNOTEJan 28 2025
R-4.5-linuxNOTEJan 28 2025
R-4.4-winNOTEJan 28 2025
R-4.4-macNOTEJan 28 2025

Exports:alignment_tableplot_sequence_alignment

Dependencies:askpassBiocGenericsBiostringsclicolorspacecrayoncurldplyrfansifarvergenericsGenomeInfoDbGenomeInfoDbDataggplot2gluegtablehttrIRangesisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmimemunsellnlmeopensslpillarpkgconfigpwalignR6RColorBrewerrlangS4VectorsscalessystibbletidyselectUCSC.utilsutf8vctrsviridisLitewithrXVector

Quickstart Guide to ggseqalign

Rendered fromggseqalign.Rmdusingknitr::rmarkdownon Jan 28 2025.

Last update: 2024-06-03
Started: 2024-05-09

Readme and manuals

Help Manual

Help pageTopics
Alignment Tablealignment_table
Plot sequence alignmentplot_sequence_alignment