{
  "_id": "6a493f9ba19c9318096e8167",
  "Package": "ggseqalign",
  "Type": "Package",
  "Title": "Minimal Visualization of Sequence Alignments",
  "Version": "1.7.0",
  "Authors@R": "person(\n\"Simeon\", \"Lim Rossmann\",\nemail = \"simeon.rossmann@nmbu.no\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-0435-8221\")\n)",
  "Description": "Simple visualizations of alignments of DNA or AA sequences\nas well as arbitrary strings. Compatible with Biostrings and\nggplot2. The plots are fully customizable using ggplot2\nmodifiers such as theme().",
  "License": "Artistic-2.0",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.1",
  "Roxygen": "list(markdown = TRUE)",
  "biocViews": "Alignment, MultipleSequenceAlignment, Software,\nVisualization",
  "URL": "https://github.com/simeross/ggseqalign",
  "BugReports": "https://github.com/simeross/ggseqalign/issues",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 13:03:12 UTC",
  "RemoteUrl": "https://github.com/bioc/ggseqalign",
  "RemoteRef": "HEAD",
  "RemoteSha": "74ce31beda2b8c84abaec063506634b98d6f5b10",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-04 05:22:34 UTC",
    "User": "root"
  },
  "Author": "Simeon Lim Rossmann [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-0435-8221>)",
  "Maintainer": "Simeon Lim Rossmann <simeon.rossmann@nmbu.no>",
  "_user": "bioc",
  "_type": "src",
  "_file": "ggseqalign_1.7.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/1db8b483be065b48c4b2673ff887d82c83ee1fe00f7b6dbafcb9643ae8e4df2a",
  "_filesize": 618978,
  "_sha256": "1db8b483be065b48c4b2673ff887d82c83ee1fe00f7b6dbafcb9643ae8e4df2a",
  "_expires": "2026-10-12T17:15:01.000Z",
  "_created": "2026-07-04T05:22:34.000Z",
  "_published": "2026-07-04T17:15:07.856Z",
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 2
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28696035029",
  "_status": "success",
  "_upstream": "https://github.com/bioc/ggseqalign",
  "_commit": {
    "id": "74ce31beda2b8c84abaec063506634b98d6f5b10",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777381392
  },
  "_maintainer": {
    "name": "Simeon Lim Rossmann",
    "email": "simeon.rossmann@nmbu.no",
    "login": "simeross",
    "description": "Bioinformatician and plant pathologist at @Norsk-institutt-for-biookonomi, lecturer at NMBU",
    "uuid": 51403284,
    "orcid": "0000-0003-0435-8221"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 85151324485,
      "time": 170,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8078656126"
    },
    {
      "job": 85151324343,
      "time": 220,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8078661679"
    },
    {
      "job": 85151324397,
      "time": 256,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8078665595"
    },
    {
      "job": 85151324523,
      "time": 104,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8078879155"
    },
    {
      "job": 85151324420,
      "time": 152,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8078884688"
    },
    {
      "job": 85151324363,
      "time": 204,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8078636057"
    },
    {
      "job": 85151324342,
      "time": 124,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8078651263"
    },
    {
      "job": 85151324339,
      "time": 137,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8078652546"
    },
    {
      "job": 85151324514,
      "time": 136,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8078652635"
    },
    {
      "job": 85151324414,
      "time": 125,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8078651329"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.4.0",
      "role": "Depends"
    },
    {
      "package": "pwalign",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "Biostrings",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.7.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.6.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "alignment",
    "multiplesequencealignment",
    "software",
    "visualization",
    "bioinformatics",
    "ggplot2-enhancements",
    "minimalistic"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "simeross",
      "count": 48,
      "uuid": 51403284
    },
    {
      "user": "jwokaty",
      "count": 3,
      "uuid": 1744257
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 445,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_devurl": "https://github.com/simeross/ggseqalign",
  "_searchresults": 6,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/ggseqalign.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/simeross/ggseqalign",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "alignment_table",
    "plot_sequence_alignment"
  ],
  "_help": [
    {
      "page": "alignment_table",
      "title": "Alignment Table",
      "topics": [
        "alignment_table"
      ]
    },
    {
      "page": "plot_sequence_alignment",
      "title": "Plot sequence alignment",
      "topics": [
        "plot_sequence_alignment"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/ggseqalign/raw/HEAD/README.md",
  "_rundeps": [
    "BiocGenerics",
    "Biostrings",
    "cli",
    "cpp11",
    "crayon",
    "dplyr",
    "farver",
    "generics",
    "ggplot2",
    "glue",
    "gtable",
    "IRanges",
    "isoband",
    "labeling",
    "lifecycle",
    "magrittr",
    "pillar",
    "pkgconfig",
    "pwalign",
    "R6",
    "RColorBrewer",
    "rlang",
    "S4Vectors",
    "S7",
    "scales",
    "Seqinfo",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "XVector"
  ],
  "_vignettes": [
    {
      "source": "ggseqalign.Rmd",
      "filename": "ggseqalign.html",
      "title": "Quickstart Guide to ggseqalign",
      "author": "Simeon Lim Rossmann",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Installation",
        "Basics",
        "Hide mismatches",
        "Styling with ggplot2",
        "Alignment parameters",
        "Session info",
        "Credit"
      ],
      "created": "2024-05-09 08:58:13",
      "modified": "2025-03-03 14:33:49",
      "commits": 7
    }
  ],
  "_score": 4,
  "_indexed": true,
  "_nocasepkg": "ggseqalign",
  "_universes": [
    "bioc",
    "simeross"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.7.0",
      "date": "2026-07-04T05:25:30.000Z",
      "distro": "resolute",
      "commit": "74ce31beda2b8c84abaec063506634b98d6f5b10",
      "fileid": "https://r2.ropensci.org/6adfe9f4b8979431317099f447555d279d78721b97d65d94896c0817d9d3f49a",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28696035029"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.7.0",
      "date": "2026-07-04T05:26:05.000Z",
      "distro": "resolute",
      "commit": "74ce31beda2b8c84abaec063506634b98d6f5b10",
      "fileid": "https://r2.ropensci.org/991ec1a6149673818383c3453a11790d3378e3725fdc2a660abe14d01ae91a8d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28696035029"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.7.0",
      "date": "2026-07-04T05:55:17.000Z",
      "commit": "74ce31beda2b8c84abaec063506634b98d6f5b10",
      "fileid": "https://r2.ropensci.org/747b1c46a143596b9a4d7e05dd509edc38edd7c8a46fdc1685e559c28ad18f90",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28696035029"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.7.0",
      "date": "2026-07-04T05:55:54.000Z",
      "commit": "74ce31beda2b8c84abaec063506634b98d6f5b10",
      "fileid": "https://r2.ropensci.org/12d3090a45c7e1594cd154aede15d9f98278a0c2f7b282b72075b8ea7593b970",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28696035029"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.7.0",
      "date": "2026-07-04T05:25:01.000Z",
      "commit": "74ce31beda2b8c84abaec063506634b98d6f5b10",
      "fileid": "https://r2.ropensci.org/05c82f2d44158248760778d8c324be4132834f55d25c8f05335b6c1e45c7c0f5",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28696035029"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.7.0",
      "date": "2026-07-04T05:23:58.000Z",
      "commit": "74ce31beda2b8c84abaec063506634b98d6f5b10",
      "fileid": "https://r2.ropensci.org/3154fc9cd9e2b198348ce3e8541eeae7e48afa452d6e595d2cac9f64edfa6886",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28696035029"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.7.0",
      "date": "2026-07-04T05:24:05.000Z",
      "commit": "74ce31beda2b8c84abaec063506634b98d6f5b10",
      "fileid": "https://r2.ropensci.org/887642e2d87953e95a53d968acc3e22cd672dca877a490584ad8360e5a369a14",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28696035029"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.7.0",
      "date": "2026-07-04T05:23:50.000Z",
      "commit": "74ce31beda2b8c84abaec063506634b98d6f5b10",
      "fileid": "https://r2.ropensci.org/47e1e81b338429ad5ee1a6e47e315d8e8f1be7637498cf2ef9a6686cd5afe108",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28696035029"
    }
  ]
}