Package: ggsc 1.3.0
Guangchuang Yu
ggsc: Visualizing Single Cell and Spatial Transcriptomics
Useful functions to visualize single cell and spatial data. It supports visualizing 'Seurat', 'SingleCellExperiment' and 'SpatialExperiment' objects through grammar of graphics syntax implemented in 'ggplot2'.
Authors:
ggsc_1.3.0.tar.gz
ggsc_1.3.0.zip(r-4.5)ggsc_1.3.0.zip(r-4.4)ggsc_1.3.0.zip(r-4.3)
ggsc_1.3.0.tgz(r-4.4-arm64)ggsc_1.3.0.tgz(r-4.4-x86_64)ggsc_1.3.0.tgz(r-4.3-arm64)ggsc_1.3.0.tgz(r-4.3-x86_64)
ggsc_1.3.0.tar.gz(r-4.5-noble)ggsc_1.3.0.tar.gz(r-4.4-noble)
ggsc_1.3.0.tgz(r-4.4-emscripten)ggsc_1.1.4.tgz(r-4.3-emscripten)
ggsc.pdf |ggsc.html✨
ggsc/json (API)
NEWS
| # Install 'ggsc' in R: |
| install.packages('ggsc', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/yulab-smu/ggsc/issues
On BioConductor:ggsc-1.3.0(bioc 3.20)ggsc-1.2.0(bioc 3.19)
Last updated 2 months agofrom:77ee00c52d
Exports:aesdraw_key_scattermore2geom_scattermore2sc_dimsc_dim_countsc_dim_geom_ellipsesc_dim_geom_featuresc_dim_geom_labelsc_dim_geom_subsc_dim_subsc_dotsc_featuresc_geom_pointsc_spatialsc_violinscale_bg_color_manualscale_bg_colour_discretescale_bg_colour_manualtheme
Dependencies:abindaskpassbase64encBHBiobaseBiocGenericsbitopsbslibcachemcaToolscliclustercodetoolscolorspacecommonmarkcowplotcpp11crayoncrosstalkcurldata.tableDelayedArraydeldirdigestdotCall64dplyrdqrngevaluatefansifarverfastDummiesfastmapfitdistrplusFNNfontawesomefsfuturefuture.applygenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggfunggplot2ggrepelggridgesglobalsgluegoftestgplotsgridExtragtablegtoolsherehighrhtmltoolshtmlwidgetshttpuvhttricaigraphIRangesirlbaisobandjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevalleidenlifecyclelistenvlmtestmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeminiUImunsellnlmeopensslparallellypatchworkpbapplypillarpkgconfigplotlyplyrpngpolyclipprogressrpromisespurrrR6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppParallelRcppProgressRcppTOMLreshape2reticulaterlangrmarkdownROCRrprojrootRSpectraRtsneS4ArraysS4VectorssassscalesscattermoresctransformSeuratSeuratObjectshinySingleCellExperimentsitmosourcetoolsspspamSparseArrayspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.utilsstringistringrSummarizedExperimentsurvivalsystensortibbletidydrtidyrtidyselecttinytexUCSC.utilsutf8uwotvctrsviridisLitewithrxfunxtableXVectoryamlyulab.utilszlibbioczoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Two-Dimensional Weighted Kernel Density Estimation And Mapping the Result To Original Dimension | CalWkdeCpp |
| Key drawing functions | draw_key_scattermore2 |
| geom_scattermore2 | geom_scattermore2 |
| sc_dim | sc_dim sc_dim,Seurat sc_dim,Seurat-method sc_dim,SingleCellExperiment sc_dim,SingleCellExperiment-method |
| sc_dim_count | sc_dim_count |
| sc_dim_geom_ellipse | sc_dim_geom_ellipse |
| sc_dim_geom_feature | sc_dim_geom_feature |
| sc_dim_geom_label | sc_dim_geom_label |
| sc_dim_geom_subset | sc_dim_geom_sub |
| sc_dim_sub | sc_dim_sub |
| sc_dot | sc_dot sc_dot,Seurat sc_dot,Seurat-method sc_dot,SingleCellExperiment sc_dot,SingleCellExperiment-method |
| sc_feature | sc_feature sc_feature,Seurat sc_feature,Seurat-method sc_feature,SingleCellExperiment sc_feature,SingleCellExperiment-method |
| sc_geom_point | sc_geom_point |
| sc_spatial | sc_spatial sc_spatial,Seurat sc_spatial,Seurat-method sc_spatial,SingleCellExperiment sc_spatial,SingleCellExperiment-method |
| sc_violin | sc_violin sc_violin,Seurat sc_violin,Seurat-method sc_violin,SingleCellExperiment sc_violin,SingleCellExperiment-method |
| Create your own discrete scale | scale_bg_color_identity scale_bg_color_manual scale_bg_colour_discrete scale_bg_colour_identity scale_bg_colour_manual |
