NEWS

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ggsc 1.7.1

• compatible with new ggplot2 > 3.5.2 (2025-07-02, Wed)

ggsc 1.6.0

• Bioconductor RELEASE_3_21 (2025-04-17, Thu)

ggsc 1.4.0

• Bioconductor RELEASE_3_20 (2024-10-30, Wed)

ggsc 1.3.1

• add plot_lisa_feature() (2024-09-06, #34, #39)
• add geom_bgpoint() layer (2024-06-18, Tue, #24)

ggsc 1.2.0

• Bioconductor RELEASE_3_19 (2024-05-01, Wed)

ggsc 1.1.4

• add background outline of umap plot (2024-04-12, Fri, #22)

ggsc 1.1.3

• support plotting pie for spatial data (2023-12-13, Wed, #18)
• extract meta.data of Seurat object (2023-12-12, Tue, #17)

ggsc 1.1.2

• add sc_dot() methods (2023-11-29, Wed, #15)
• update vignette to link to the online docs (https://yulab-smu.top/ggsc)
• add README.Rmd and README.md in github repo
• optimization: retrieve embedding without FetchData (2023-11-27, Mon, #14)
• bug fixed for Seurat object (2023-10-31, Tue, #12, #13)

ggsc 1.1.1

• ignore the tissue section when image is not exist (2023-10-31, Tue, #12)
• introduce joint to combine all features with joint.fun and speed up calculation of kde using RcppParallel (2023-10-25, Wed, #11)

ggsc 1.0.0

• Bioconductor RELEASE_3_18 (2023-10-25, Wed)

ggsc 0.99.11

• support density visualization for single and spatial transcriptomic data (2023-10-18, Wed)

ggsc 0.99.10

• on Bioconductor (2023-10-16, Mon)
• add \value session in the reexports.Rd (2023-10-15, Sun)
• add package level man page and update vignette (2023-10-14, Sat)
• add examples in Rd to satisfy BiocCheck (2023-09-18, Mon, #7)
• sc_dim_count() function to generate a barplot from a dimension reduction plot (sc_dim() plot) to visualize the number of cells for each clusters (2023-09-13, Wed)
• add 'biocViews' in DESCRIPTION required by Bioconductor

ggsc 0.99.0

• compatible with 'SingleCellExperiment' (2023-09-05, Tue, #5)
• using S4 OOP to reorganize the functions (2023-09-05, Tue, #4)
• rename the package to 'ggsc' as there is a package called 'scplot' in CRAN
• add H&E image to sc_spatial() (#3)

ggsc 0.0.3

• sc_spatial to visualize spatial features (2022-12-07, Wed)

ggsc 0.0.2

• sc_dim_geom_sub and sc_dim_sub (2022-12-03, Sat)
• sc_dim_geom_ellipse to draw ellipse on sc_dim() (2022-12-02, Fri)

ggsc 0.0.1

• several functions implemented (2022-11-09, Wed)
  • sc_dim
  • sc_dim_geom_feature
  • sc_dim_geom_label
  • sc_feature
  • sc_geom_point
  • sc_violin