Install package | Introduction | Importing MSA data | Basic use: MSA Visualization | Color Schemes | Font | MSA Annotation | Learn more | Session Info
Package: ggmsa 1.19.1
Guangchuang Yu
ggmsa: Plot Multiple Sequence Alignment using 'ggplot2'
A visual exploration tool for multiple sequence alignment and associated data. Supports MSA of DNA, RNA, and protein sequences using 'ggplot2'. Multiple sequence alignment can easily be combined with other 'ggplot2' plots, such as phylogenetic tree Visualized by 'ggtree', boxplot, genome map and so on. More features: visualization of sequence logos, sequence bundles, RNA secondary structures and detection of sequence recombinations.
Authors:
ggmsa_1.19.1.tar.gz
ggmsa_1.19.1.zip(r-4.7)ggmsa_1.19.1.zip(r-4.6)ggmsa_1.19.1.zip(r-4.5)
ggmsa_1.19.1.tgz(r-4.6-any)ggmsa_1.19.1.tgz(r-4.5-any)
ggmsa_1.19.1.tar.gz(r-4.7-any)ggmsa_1.19.1.tar.gz(r-4.6-any)
ggmsa_1.19.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ggmsa/json (API)
| # Install 'ggmsa' in R: |
| install.packages('ggmsa', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/yulab-smu/ggmsa/issues
On BioConductor:ggmsa-1.19.0(bioc 3.24)ggmsa-1.18.0(bioc 3.23)
softwarevisualizationalignmentannotationmultiplesequencealignment
Last updated from:804859e2ad. Checks:1 ERROR, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 184 | ||
| linux-devel-x86_64 | OK | 287 | ||
| source / vignettes | OK | 247 | ||
| linux-release-x86_64 | OK | 278 | ||
| macos-release-arm64 | OK | 185 | ||
| macos-oldrel-arm64 | OK | 136 | ||
| windows-devel | OK | 176 | ||
| windows-release | OK | 160 | ||
| windows-oldrel | OK | 157 | ||
| wasm-release | OK | 163 |
Exports:adjust_allyassign_dmsavailable_colorsavailable_fontsavailable_msaextract_seqfacet_msageom_GCgeom_helixgeom_msageom_msaBargeom_seedgeom_seqlogogghelixggmafggmsaggSeqBundlemerge_seqplotread_mafreadSSfilereset_posseqdiffseqlogoshowsimplify_hdatasimplottheme_msatidy_hdatatidy_maf_dftidy_msatreeMSA_plot
Dependencies:apeaplotbase64encBiocGenericsBiostringsbslibcachemclicpp11crayondigestdplyrevaluatefarverfastmapfontawesomefontBitstreamVerafontLiberationfontquiverfsgdtoolsgenericsggforceggfunggiraphggplot2ggplotifyggtreegluegridGraphicsgtablehighrhtmltoolshtmlwidgetsIRangesisobandjquerylibjsonliteknitrlabelinglatticelazyevallifecyclemagrittrMASSmemoisemimenlmepatchworkpillarpkgconfigpolyclippurrrR4RNAR6rappdirsRColorBrewerRcpprlangrmarkdownS4VectorsS7sassscalesSeqinfoseqmagickstringistringrsystemfontstibbletidyrtidyselecttidytreetinytextreeiotweenrutf8vctrsviridisLitewithrxfunXVectoryamlyulab.utils
