# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "ggmsa" in publications use:'
type: software
license: Artistic-2.0
title: 'ggmsa: Plot Multiple Sequence Alignment using ''ggplot2'''
version: 1.11.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.ggmsa
- type: url
  value: https://www.amazon.com/Integration-Manipulation-Visualization-Phylogenetic-Computational-ebook/dp/B0B5NLZR1Z/
abstract: 'A visual exploration tool for multiple sequence alignment and associated
  data. Supports MSA of DNA, RNA, and protein sequences using ''ggplot2''. Multiple
  sequence alignment can easily be combined with other ''ggplot2'' plots, such as
  phylogenetic tree Visualized by ''ggtree'', boxplot, genome map and so on. More
  features: visualization of sequence logos, sequence bundles, RNA secondary structures
  and detection of sequence recombinations.'
authors:
- family-names: Zhou
  given-names: Lang
  email: nyzhoulang@gmail.com
- family-names: Yu
  given-names: Guangchuang
  email: guangchuangyu@gmail.com
  orcid: https://orcid.org/0000-0002-6485-8781
preferred-citation:
  type: book
  title: Data Integration, Manipulation and Visualization of Phylogenetic Treess
  authors:
  - family-names: Yu
    given-names: Guangchuang
    email: guangchuangyu@gmail.com
    orcid: https://orcid.org/0000-0002-6485-8781
  publisher:
    name: Chapman and Hall/CRC
  year: '2022'
  edition: 1st edition
  url: https://www.amazon.com/Integration-Manipulation-Visualization-Phylogenetic-Computational-ebook/dp/B0B5NLZR1Z/
repository: https://bioc.r-universe.dev
repository-code: https://github.com/YuLab-SMU/ggmsa
commit: 6f21768cc7cfcbedebc1e78ec95500a0d68ddbce
url: https://doi.org/10.1093/bib/bbac222(paper)
contact:
- family-names: Zhou
  given-names: Lang
  email: nyzhoulang@gmail.com
references:
- type: article
  title: 'ggmsa: a visual exploration tool for multiple sequence alignment and associated
    data'
  authors:
  - family-names: Zhou
    given-names: Lang
  - family-names: Feng
    given-names: Tingze
  - family-names: Xu
    given-names: Shuangbin
  - family-names: Gao
    given-names: Fangluan
  - family-names: Lam
    given-names: Tommy T
  - family-names: Wang
    given-names: Qianwen
  - family-names: Wu
    given-names: Tianzhi
  - family-names: Huang
    given-names: Huina
  - family-names: Zhan
    given-names: Li
  - family-names: Li
    given-names: Lin
  - family-names: Guan
    given-names: Yi
  - family-names: Dai
    given-names: Zehan
  - family-names: Yu
    given-names: Guangchuang
  journal: BRIEFINGS IN BIOINFORMATICS
  volume: '23'
  issue: '4'
  year: '2022'
  month: '6'
  issn: 1467-5463
  doi: 10.1093/bib/bbac222
  url: https://academic.oup.com/bib/article-abstract/23/4/bbac222/6603927