Package: ggmanh 1.9.7
ggmanh: Visualization Tool for GWAS Result
Manhattan plot and QQ Plot are commonly used to visualize the end result of Genome Wide Association Study. The "ggmanh" package aims to keep the generation of these plots simple while maintaining customizability. Main functions include manhattan_plot, qqunif, and thinPoints.
Authors:
ggmanh_1.9.7.tar.gz
ggmanh_1.9.7.zip(r-4.5)ggmanh_1.9.7.zip(r-4.4)ggmanh_1.9.7.zip(r-4.3)
ggmanh_1.9.7.tgz(r-4.4-any)ggmanh_1.9.7.tgz(r-4.3-any)
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ggmanh.pdf |ggmanh.html✨
ggmanh/json (API)
NEWS
# Install 'ggmanh' in R: |
install.packages('ggmanh', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:ggmanh-1.9.6(bioc 3.20)ggmanh-1.8.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 21 days agofrom:5114ae2995
Exports:calc_new_posdefault_gds_pathgds_annotatemanhattan_data_preprocessmanhattan_plotmanhattan_plot.defaultqqunifthinPoints
Dependencies:askpassBiocGenericsBiostringsclicolorspacecpp11crayoncurldplyrfansifarvergdsfmtgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2ggrepelgluegtablehttrIRangesisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmimemunsellnlmeopensslpillarpkgconfigpurrrR6RColorBrewerRcpprlangS4VectorsscalesSeqArraystringistringrsystibbletidyrtidyselectUCSC.utilsutf8vctrsviridisLitewithrXVectorzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Calculate new x-position of each point | calc_new_pos |
Path to Default GDS File | default_gds_path |
Annotation with GDS File | gds_annotate |
ggmanh: A package for visualization of GWAS results. | ggmanh-package ggmanh |
gnomAD Variant Annotation in SeqArray Format | ggmanh_annotation_gds |
Preprocess GWAS Result | manhattan_data_preprocess manhattan_data_preprocess,GRanges-method manhattan_data_preprocess.data.frame manhattan_data_preprocess.default |
Manhattan Plotting | manhattan_plot manhattan_plot,GRanges-method manhattan_plot.data.frame manhattan_plot.default manhattan_plot.MPdata |
Plot Quantile-Quantile Plot of p-values against uniform distribution. | qqunif |
Thin Data Points | thinPoints |