Added a visualization that is an extension of manhattan plot called binned manhattan plot. Instead of plotting each individual variant, the variants are binned based on position (x-axis) and log10 p-value (y-axis). More information can be found in the vignette.
Preprocessing function is binned_manhattan_preprocess and plotting function is binned_manhattan_plot.
Change the way positions of the variants are calculated. MPdata now saves
the unscaled positions and the scaling is done in manhattan_plot function.
(this is for the x-axis)
To get the actual relative positions used in the manhattan plot, use calc_new_pos()
on the MPdata object.
Gap between chromosomes can be rescaled by using chr.gap.scaling= argument
inside manhattan_data_preprocess and manhattan_plot functions.
Now accounts for negative positions.
NEWS.md file to track changes to the package.