Introduction | Quick start | Using low-level functions | Finding overlaps | Searching on text | Fetching all data | Flushing the cache | Customizing the database | Creating the custom database | Reading custom files | Contributing custom sets | Session information
Package: gesel 0.99.5
Aaron Lun
gesel: Search for Interesting Gene Sets
Query the gesel indices to identify interesting gene sets. Users can test for enrichment in their own list of genes and/or search by text in the set names or descriptions. The indices can be hosted remotely or on a local filesystem.
Authors:
gesel_0.99.5.tar.gz
gesel_0.99.5.zip(r-4.7-x86_64)gesel_0.99.5.zip(r-4.7-arm64)gesel_0.99.5.zip(r-4.6-x86_64)gesel_0.99.5.zip(r-4.6-arm64)gesel_0.99.5.zip(r-4.5-x86_64)
gesel_0.99.5.tgz(r-4.6-x86_64)gesel_0.99.5.tgz(r-4.6-arm64)gesel_0.99.5.tgz(r-4.5-x86_64)gesel_0.99.5.tgz(r-4.5-arm64)
gesel_0.99.5.tar.gz(r-4.7-arm64)gesel_0.99.5.tar.gz(r-4.7-x86_64)gesel_0.99.5.tar.gz(r-4.6-arm64)gesel_0.99.5.tar.gz(r-4.6-x86_64)
gesel_0.99.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
gesel/json (API)
| # Install 'gesel' in R: |
| install.packages('gesel', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/gesel-inc/gesel-r/issues
On BioConductor:gesel-0.99.5(bioc 3.24)
genesetenrichmentdataimportpathwayszlibcpp
Last updated from:58b2f76543. Checks:1 WARNING, 15 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 169 | ||
| linux-devel-arm64 | OK | 194 | ||
| linux-devel-x86_64 | OK | 275 | ||
| source / vignettes | OK | 231 | ||
| linux-release-arm64 | OK | 192 | ||
| linux-release-x86_64 | OK | 315 | ||
| macos-release-arm64 | OK | 176 | ||
| macos-release-x86_64 | OK | 577 | ||
| macos-oldrel-arm64 | OK | 148 | ||
| macos-oldrel-x86_64 | OK | 322 | ||
| windows-devel-arm64 | OK | 286 | ||
| windows-devel-x86_64 | OK | 179 | ||
| windows-release-arm64 | OK | 259 | ||
| windows-release-x86_64 | OK | 193 | ||
| windows-oldrel-x86_64 | OK | 183 | ||
| wasm-release | OK | 153 |
Exports:cacheDirectoryconsolidateBlockSizecreateGeneIdentifierMapdatabaseUrldownloadDatabaseFiledownloadDatabaseRangesdownloadGeneFiledownloadMultipartRangeseffectiveNumberOfGenesfetchAllCollectionsfetchAllGenesfetchAllSetsfetchCollectionSizesfetchGenesForAllSetsfetchGenesForSomeSetsfetchGeneTypesfetchGeneVersionfetchSetsForAllGenesfetchSetsForSomeGenesfetchSetSizesfetchSomeCollectionsfetchSomeSetsfindOverlappingSetsflushMemoryCachegeneUrlloadAllSetsmapGenesByNamenewConfigprepareDatabaseFilesprepareGeneFilesquerySetsrangeConcurrencyreadDatabaseRangesrenameGenesInSetssearchGenessearchOverlappingSetssearchSetTextvalidateDatabaseFilesvalidateGeneFiles
Dependencies:askpassassortheadclicurlgluehttr2lifecyclemagrittropensslR6rappdirsRcpprlangsysvctrswithr
