Package: geneplast 1.31.0
geneplast: Evolutionary and plasticity analysis of orthologous groups
Geneplast is designed for evolutionary and plasticity analysis based on orthologous groups distribution in a given species tree. It uses Shannon information theory and orthologs abundance to estimate the Evolutionary Plasticity Index. Additionally, it implements the Bridge algorithm to determine the evolutionary root of a given gene based on its orthologs distribution.
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geneplast.pdf |geneplast.html✨
geneplast/json (API)
NEWS
# Install 'geneplast' in R: |
install.packages('geneplast', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:geneplast-1.31.0(bioc 3.20)geneplast-1.30.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:c41ec8645d
Exports:gplastgplast.getgplast.preprocessgrootgroot.getgroot.plotgroot.preprocessogr2igraphogr2tni
Dependencies:apeclicpp11data.tabledigestglueigraphlatticelifecyclemagrittrMatrixnlmepkgconfigRcpprlangsnowvctrs
Geneplast: large-scale evolutionary analysis of orthologous groups.
Rendered fromgeneplast.Rmd
usingknitr::rmarkdown
on Jun 30 2024.Last update: 2023-08-15
Started: 2018-01-23
Supporting Material for Trefflich2019
Rendered fromgeneplast_Trefflich2019.Rmd
usingknitr::rmarkdown
on Jun 30 2024.Last update: 2019-11-05
Started: 2019-05-24