Package: geneplast 1.39.0

Mauro Castro

geneplast: Evolutionary and plasticity analysis of orthologous groups

Geneplast is designed for evolutionary and plasticity analysis based on orthologous groups distribution in a given species tree. It uses Shannon information theory and orthologs abundance to estimate the Evolutionary Plasticity Index. Additionally, it implements the Bridge algorithm to determine the evolutionary root of a given gene based on its orthologs distribution.

Authors:Rodrigo Dalmolin, Mauro Castro

geneplast_1.39.0.tar.gz
geneplast_1.39.0.zip(r-4.7)geneplast_1.39.0.zip(r-4.6)geneplast_1.39.0.zip(r-4.5)
geneplast_1.39.0.tgz(r-4.6-any)geneplast_1.39.0.tgz(r-4.5-any)
geneplast_1.39.0.tar.gz(r-4.7-any)geneplast_1.39.0.tar.gz(r-4.6-any)
geneplast_1.39.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
geneplast/json (API)

# Install 'geneplast' in R:
install.packages('geneplast', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • ppi.gs - A pre-processed igraph object for the geneplast package.

On BioConductor:geneplast-1.39.0(bioc 3.24)geneplast-1.38.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneticsgeneregulationsystemsbiology

2.86 score 18 scripts 2 mentions 9 exports 17 dependencies

Last updated from:b554b71554. Checks:2 ERROR, 7 WARNING, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR223
linux-devel-x86_64WARNING220
source / vignettesERROR265
linux-release-x86_64WARNING234
macos-release-arm64WARNING170
macos-oldrel-arm64WARNING155
windows-develWARNING370
windows-releaseWARNING357
windows-oldrelWARNING344
wasm-releaseOK220

Exports:gplastgplast.getgplast.preprocessgrootgroot.getgroot.plotgroot.preprocessogr2igraphogr2tni

Dependencies:apeclicpp11data.tabledigestglueigraphlatticelifecyclemagrittrMatrixnlmepkgconfigRcpprlangsnowvctrs