Package: gdsfmt 1.43.3

Xiuwen Zheng
gdsfmt: R Interface to CoreArray Genomic Data Structure (GDS) Files
Provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files. GDS is portable across platforms with hierarchical structure to store multiple scalable array-oriented data sets with metadata information. It is suited for large-scale datasets, especially for data which are much larger than the available random-access memory. The gdsfmt package offers the efficient operations specifically designed for integers of less than 8 bits, since a diploid genotype, like single-nucleotide polymorphism (SNP), usually occupies fewer bits than a byte. Data compression and decompression are available with relatively efficient random access. It is also allowed to read a GDS file in parallel with multiple R processes supported by the package parallel.
Authors:
gdsfmt_1.43.3.tar.gz
gdsfmt_1.43.3.zip(r-4.5)gdsfmt_1.43.3.zip(r-4.4)gdsfmt_1.43.3.zip(r-4.3)
gdsfmt_1.43.3.tgz(r-4.5-x86_64)gdsfmt_1.43.3.tgz(r-4.5-arm64)gdsfmt_1.43.3.tgz(r-4.4-x86_64)gdsfmt_1.43.3.tgz(r-4.4-arm64)gdsfmt_1.43.3.tgz(r-4.3-x86_64)gdsfmt_1.43.3.tgz(r-4.3-arm64)
gdsfmt_1.43.3.tar.gz(r-4.5-noble)gdsfmt_1.43.3.tar.gz(r-4.4-noble)
gdsfmt.pdf |gdsfmt.html✨
gdsfmt/json (API)
NEWS
# Install 'gdsfmt' in R: |
install.packages('gdsfmt', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/zhengxwen/gdsfmt/issues
On BioConductor:gdsfmt-1.43.2(bioc 3.21)gdsfmt-1.42.1(bioc 3.20)
infrastructuredataimportbioinformaticsgds-formatgenomicscpp
Last updated 13 days agofrom:6443a1277f. Checks:12 OK. Indexed: yes.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Mar 15 2025 |
R-4.5-win-x86_64 | OK | Mar 15 2025 |
R-4.5-mac-x86_64 | OK | Mar 15 2025 |
R-4.5-mac-aarch64 | OK | Mar 15 2025 |
R-4.5-linux-x86_64 | OK | Mar 15 2025 |
R-4.4-win-x86_64 | OK | Mar 15 2025 |
R-4.4-mac-x86_64 | OK | Mar 15 2025 |
R-4.4-mac-aarch64 | OK | Mar 15 2025 |
R-4.4-linux-x86_64 | OK | Mar 15 2025 |
R-4.3-win-x86_64 | OK | Mar 15 2025 |
R-4.3-mac-x86_64 | OK | Mar 15 2025 |
R-4.3-mac-aarch64 | OK | Mar 15 2025 |
Exports:add.gdsnaddfile.gdsnaddfolder.gdsnappend.gdsnapply.gdsnassign.gdsncache.gdsncleanup.gdsclosefn.gdsclusterApply.gdsncnt.gdsncompression.gdsncopyto.gdsncreatefn.gdsdelete.attr.gdsndelete.gdsndiagnosis.gdsdigest.gdsnexist.gdsnget.attr.gdsngetfile.gdsngetfolder.gdsnindex.gdsnis.element.gdsnis.sparse.gdsnlasterr.gdsls.gdsnmoveto.gdsnname.gdsnobjdesp.gdsnopenfn.gdspermdim.gdsnprint.gds.classprint.gdsn.classput.attr.gdsnread.gdsnreadex.gdsnreadmode.gdsnrename.gdsnsetdim.gdsnshowshowfile.gdssummarize.gdsnsync.gdssystem.gdsunload.gdsnwrite.gdsn
Dependencies: