Package: gDR 1.5.1
gDR: Umbrella package for R packages in the gDR suite
Package is a part of the gDR suite. It reexports functions from other packages in the gDR suite that contain critical processing functions and utilities. The vignette walks through the full processing pipeline for drug response analyses that the gDR suite offers.
Authors:
gDR_1.5.1.tar.gz
gDR_1.5.1.zip(r-4.5)gDR_1.5.1.zip(r-4.4)gDR_1.5.1.zip(r-4.3)
gDR_1.5.1.tgz(r-4.5-any)gDR_1.5.1.tgz(r-4.4-any)gDR_1.5.1.tgz(r-4.3-any)
gDR_1.5.1.tar.gz(r-4.5-noble)gDR_1.5.1.tar.gz(r-4.4-noble)
gDR_1.5.1.tgz(r-4.4-emscripten)gDR_1.5.1.tgz(r-4.3-emscripten)
gDR.pdf |gDR.html✨
gDR/json (API)
NEWS
# Install 'gDR' in R: |
install.packages('gDR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/gdrplatform/gdr/issues
Pkgdown site:https://gdrplatform.github.io
- small_combo_data - Small data.table with raw combo data used for processing via gDR
- small_data - Small data.table with raw data used for processing via gDR
On BioConductor:gDR-1.5.1(bioc 3.21)gDR-1.4.0(bioc 3.20)
Last updated 4 months agofrom:8e0f13da6c. Checks:5 OK, 2 ERROR, 1 WARNING. Indexed: yes.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Feb 05 2025 |
R-4.5-win | OK | Feb 05 2025 |
R-4.5-mac | WARNING | Feb 05 2025 |
R-4.5-linux | OK | Feb 05 2025 |
R-4.4-win | OK | Feb 05 2025 |
R-4.4-mac | OK | Feb 05 2025 |
R-4.3-win | ERROR | Feb 05 2025 |
R-4.3-mac | ERROR | Jan 06 2025 |
Exports:import_data
Dependencies:abindaskpassassertthatbackportsbase64encbenchBHBiobaseBiocBaseUtilsBiocGenericsBiocParallelbitbit64bitopsbootbroombslibBumpyMatrixcachemcarcarDatacaToolscelestialcellrangercheckmateclicliprclustercodetoolscolorspacecommonmarkcoopCoreGxcowplotcpp11crayoncrosstalkcurldata.tableDelayedArrayDerivdigestdoBydownloaderdplyrdrcDTevaluatefansifarverfastmapfastmatchfgseafontawesomeforcatsforeignformatRFormulafsfutile.loggerfutile.optionsgDRcoregDRimportgDRutilsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegplotsgtablegtoolshavenhighrhmshtmltoolshtmlwidgetshttpuvhttrigraphIRangesisobandjquerylibjsonlitejsonvalidateKernSmoothknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmalme4lsamagicaxismagrittrmapprojmapsmarrayMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrmultcompMultiAssayExperimentmunsellmvtnormNISTunitsnlmenloptrnnetnumDerivopensslopenxlsxpbkrtestPharmacoGxpianopillarpkgconfigplotrixplyrpracmaprettyunitsprofmemprogresspromisespurrrquantregR.methodsS3R.ooR.utilsR6RANNrappdirsrbibutilsRColorBrewerRcppRcppEigenRdpackreadrreadxlreformulasrelationsrematchreshape2riorlangrmarkdownS4ArraysS4VectorssandwichsassscalessetsshinyshinydashboardshinyjsslamsmsnowSnowballCsourcetoolsSparseArraySparseMstatmodstringistringrSummarizedExperimentsurvivalsysTH.datatibbletidyrtidyselecttinytextzdbUCSC.utilsutf8V8vctrsviridisLitevisNetworkvroomwithrwritexlxfunXMLxtableXVectoryamlzipzoo
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Import raw data | import_data |
Small data.table with raw combo data used for processing via gDR | small_combo_data |
Small data.table with raw data used for processing via gDR | small_data |