Package: gDR 1.11.3

Arkadiusz Gladki

gDR: Umbrella package for R packages in the gDR suite

Package is a part of the gDR suite. It reexports functions from other packages in the gDR suite that contain critical processing functions and utilities. The vignette walks through the full processing pipeline for drug response analyses that the gDR suite offers.

Authors:Allison Vuong [aut], Bartosz Czech [aut], Arkadiusz Gladki [cre, aut], Marc Hafner [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut]

gDR_1.11.3.tar.gz
gDR_1.11.3.zip(r-4.7)gDR_1.11.3.zip(r-4.6)gDR_1.11.3.zip(r-4.5)
gDR_1.11.3.tgz(r-4.6-any)gDR_1.11.3.tgz(r-4.5-any)
gDR_1.11.3.tar.gz(r-4.7-any)gDR_1.11.3.tar.gz(r-4.6-any)
gDR_1.11.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
gDR/json (API)
NEWS

# Install 'gDR' in R:
install.packages('gDR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/gdrplatform/gdr/issues

Pkgdown/docs site:https://gdrplatform.github.io

Datasets:
  • small_combo_data - Small data.table with raw combo data used for processing via gDR
  • small_data - Small data.table with raw data used for processing via gDR

On BioConductor:gDR-1.11.2(bioc 3.24)gDR-1.10.0(bioc 3.23)

softwaredataimportshinyapps

4.65 score 2 stars 9 scripts 251 downloads 1 exports 205 dependencies

Last updated from:1b8ef1c1b5. Checks:1 NOTE, 8 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE235
linux-devel-x86_64ERROR502
source / vignettesERROR352
linux-release-x86_64ERROR505
macos-release-arm64ERROR187
macos-oldrel-arm64ERROR136
windows-develERROR253
windows-releaseERROR234
windows-oldrelERROR250
wasm-releaseOK206

Exports:import_data

Dependencies:abindassertthatbackportsbase64encbenchBHBiobaseBiocBaseUtilsBiocGenericsBiocParallelbitbit64bitopsbootbroombslibBumpyMatrixcachemcarcarDatacaToolscelestialcellrangercheckmateclicliprclustercodetoolscolorspacecommonmarkcoopCoreGxcowplotcpp11crayoncrosstalkcurldata.tableDelayedArrayDerivdigestdoBydownloaderdplyrdrcDTevaluatefarverfastmapfastmatchfgseafontawesomeforcatsforecastforeignformatRFormulafracdifffsfutile.loggerfutile.optionsgDRcoregDRimportgDRutilsgenericsGenomicRangesggplot2gluegplotsgtablegtoolshavenhighrhmshtmltoolshtmlwidgetshttpuvigraphIRangesisobandjquerylibjsonlitejsonvalidateKernSmoothknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmalme4lmtestlsamagicaxismagrittrmapprojmapsmarrayMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrmultcompMultiAssayExperimentmvtnormNISTunitsnlmenloptrnnetnumDerivopenxlsxotelpbkrtestPharmacoGxpianopillarpkgconfigplotrixplyrpracmaprettyunitsprofmemprogresspromisespurrrqs2quantregR.methodsS3R.ooR.utilsR6RANNrappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRcppParallelRdpackreadrreadxlreformulasrelationsrematchreshape2riorlangrmarkdownS4ArraysS4VectorsS7sandwichsassscalesSeqinfosetsshinyshinydashboardshinyjsslamsmsnowSnowballCsourcetoolsSparseArraySparseMstatmodstringfishstringistringrSummarizedExperimentsurvivalTH.datatibbletidyrtidyselecttimeDatetinytextzdburcautf8V8vctrsviridisLitevisNetworkvroomwithrwritexlxfunXMLxtableXVectoryamlzipzoo