Package: gDR 1.3.1

Arkadiusz Gladki

gDR: Umbrella package for R packages in the gDR suite

Package is a part of the gDR suite. It reexports functions from other packages in the gDR suite that contain critical processing functions and utilities. The vignette walks through the full processing pipeline for drug response analyses that the gDR suite offers.

Authors:Allison Vuong [aut], Bartosz Czech [aut], Arkadiusz Gladki [cre, aut], Marc Hafner [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut]

gDR_1.3.1.tar.gz
gDR_1.3.1.zip(r-4.5)gDR_1.3.1.zip(r-4.4)gDR_1.3.1.zip(r-4.3)
gDR_1.3.1.tgz(r-4.4-any)gDR_1.3.1.tgz(r-4.3-any)
gDR_1.3.1.tar.gz(r-4.5-noble)gDR_1.3.1.tar.gz(r-4.4-noble)
gDR_1.3.1.tgz(r-4.4-emscripten)gDR_1.3.1.tgz(r-4.3-emscripten)
gDR.pdf |gDR.html✨
gDR/json (API)
NEWS

# Install 'gDR' in R:

install.packages('gDR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/gdrplatform/gdr/issues

Datasets:

small_combo_data - Small data.table with raw combo data used for processing via gDR
small_data - Small data.table with raw data used for processing via gDR

On BioConductor:gDR-1.3.1(bioc 3.20)gDR-1.2.0(bioc 3.19)

bioconductor-package

1 exports 1.85 score 199 dependencies

Last updated 1 months agofrom:3579cdc095

Exports:import_data

Dependencies:abind askpass assertthat backports base64enc bench BH Biobase BiocBaseUtils BiocGenerics BiocParallel bit bit64 bitops boot broom bslib BumpyMatrix cachem car carData caTools celestial cellranger checkmate cli clipr cluster codetools colorspace commonmark coop CoreGx cowplot cpp11 crayon crosstalk curl data.table DelayedArray Deriv digest doBy downloader dplyr drc DT evaluate fansi farver fastmap fastmatch fgsea fontawesome forcats foreign formatR fs futile.logger futile.options gDRcore gDRimport gDRutils generics GenomeInfoDb GenomeInfoDbData GenomicRanges ggplot2 glue gplots gtable gtools haven highr hms htmltools htmlwidgets httpuv httr igraph IRanges isoband jquerylib jsonlite jsonvalidate KernSmooth knitr labeling lambda.r later lattice lazyeval lifecycle limma lme4 lsa magicaxis magrittr mapproj maps marray MASS Matrix MatrixGenerics MatrixModels matrixStats memoise mgcv microbenchmark mime minqa modelr multcomp MultiAssayExperiment munsell mvtnorm NISTunits nlme nloptr nnet numDeriv openssl openxlsx pbkrtest PharmacoGx piano pillar pkgconfig plotrix plyr pracma prettyunits profmem progress promises purrr quantreg R.methodsS3 R.oo R.utils R6 RANN rappdirs RColorBrewer Rcpp RcppEigen readr readxl relations rematch reshape2 rio rlang rmarkdown S4Arrays S4Vectors sandwich sass scales sets shiny shinydashboard shinyjs slam sm snow SnowballC sourcetools SparseArray SparseM statmod stringi stringr SummarizedExperiment survival sys TH.data tibble tidyr tidyselect tinytex tzdb UCSC.utils utf8 V8 vctrs viridisLite visNetwork vroom withr writexl xfun XML xtable XVector yaml zip zlibbioc zoo

gDR suite

gDR team

Rendered fromgDR.Rmdusingknitr::rmarkdownon Jun 29 2024.

Last update: 2024-01-19
Started: 2021-03-03

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Import raw data	import_data
Small data.table with raw combo data used for processing via gDR	small_combo_data
Small data.table with raw data used for processing via gDR	small_data