Package: gDR 1.11.3

Arkadiusz Gladki

gDR: Umbrella package for R packages in the gDR suite

Package is a part of the gDR suite. It reexports functions from other packages in the gDR suite that contain critical processing functions and utilities. The vignette walks through the full processing pipeline for drug response analyses that the gDR suite offers.

Authors:Allison Vuong [aut], Bartosz Czech [aut], Arkadiusz Gladki [cre, aut], Marc Hafner [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut]

gDR_1.11.3.tar.gz
gDR_1.11.3.zip(r-4.7)gDR_1.11.3.zip(r-4.6)gDR_1.11.3.zip(r-4.5)
gDR_1.11.3.tgz(r-4.6-any)gDR_1.11.3.tgz(r-4.5-any)
gDR_1.11.3.tar.gz(r-4.7-any)gDR_1.11.3.tar.gz(r-4.6-any)
gDR_1.11.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
gDR/json (API)

# Install 'gDR' in R:

install.packages('gDR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/gdrplatform/gdr/issues

Pkgdown/docs site:https://gdrplatform.github.io

Datasets:

small_combo_data - Small data.table with raw combo data used for processing via gDR
small_data - Small data.table with raw data used for processing via gDR

On BioConductor:gDR-1.11.3(bioc 3.24)gDR-1.10.0(bioc 3.23)

software dataimport shinyapps

5.56 score 2 stars 9 scripts 256 downloads 1 exports 204 dependencies

Last updated from:1b8ef1c1b5. Checks:1 WARNING, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	WARNING	229
linux-devel-x86_64	OK	405
source / vignettes	OK	352
linux-release-x86_64	OK	373
macos-release-arm64	OK	145
macos-oldrel-arm64	OK	150
windows-devel	OK	245
windows-release	OK	239
windows-oldrel	OK	294
wasm-release	OK	200

Exports:import_data

Dependencies:abind assertthat backports base64enc bench BH Biobase BiocBaseUtils BiocGenerics BiocParallel bit bit64 bitops boot broom bslib BumpyMatrix cachem car carData caTools celestial cellranger checkmate cli clipr cluster codetools colorspace commonmark coop CoreGx cowplot cpp11 crayon crosstalk curl data.table DelayedArray Deriv digest doBy downloader dplyr drc DT evaluate farver fastmap fastmatch fgsea fontawesome forcats forecast foreign formatR Formula fracdiff fs futile.logger futile.options gDRcore gDRimport gDRutils generics GenomicRanges ggplot2 glue gplots gtable gtools haven highr hms htmltools htmlwidgets httpuv igraph IRanges isoband jquerylib jsonlite jsonvalidate KernSmooth knitr labeling lambda.r later lattice lazyeval lifecycle limma lme4 lmtest lsa magicaxis magrittr mapproj maps marray MASS Matrix MatrixGenerics MatrixModels matrixStats memoise mgcv mime minqa modelr multcomp MultiAssayExperiment mvtnorm NISTunits nlme nloptr nnet numDeriv openxlsx otel pbkrtest PharmacoGx piano pillar pkgconfig plotrix plyr pracma prettyunits profmem progress promises purrr qs2 quantreg R.methodsS3 R.oo R.utils R6 RANN rappdirs rbibutils RColorBrewer Rcpp RcppArmadillo RcppEigen RcppParallel Rdpack readr readxl reformulas relations rematch reshape2 rio rlang rmarkdown S4Arrays S4Vectors S7 sandwich sass scales Seqinfo sets shiny shinydashboard shinyjs slam sm snow SnowballC sourcetools SparseArray SparseM statmod stringfish stringi stringr SummarizedExperiment survival TH.data tibble tidyr tidyselect timeDate tinytex tzdb urca utf8 V8 vctrs viridisLite visNetwork vroom withr writexl xfun XML xtable XVector yaml zip zoo

gDR suite

Rendered fromgDR.Rmdusingknitr::rmarkdown

Last update: 2026-05-28
Started: 2021-03-03

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Import raw data	import_data
Small data.table with raw combo data used for processing via gDR	small_combo_data
Small data.table with raw data used for processing via gDR	small_data