Package: gDR 1.5.1

Arkadiusz Gladki

gDR: Umbrella package for R packages in the gDR suite

Package is a part of the gDR suite. It reexports functions from other packages in the gDR suite that contain critical processing functions and utilities. The vignette walks through the full processing pipeline for drug response analyses that the gDR suite offers.

Authors:Allison Vuong [aut], Bartosz Czech [aut], Arkadiusz Gladki [cre, aut], Marc Hafner [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut]

gDR_1.5.1.tar.gz
gDR_1.5.1.zip(r-4.5)gDR_1.5.1.zip(r-4.4)gDR_1.5.1.zip(r-4.3)
gDR_1.5.1.tgz(r-4.4-any)gDR_1.5.1.tgz(r-4.3-any)
gDR_1.5.1.tar.gz(r-4.5-noble)gDR_1.5.1.tar.gz(r-4.4-noble)
gDR_1.5.1.tgz(r-4.4-emscripten)gDR_1.5.1.tgz(r-4.3-emscripten)
gDR.pdf |gDR.html✨
gDR/json (API)
NEWS

# Install 'gDR' in R:
install.packages('gDR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/gdrplatform/gdr/issues

Datasets:
  • small_combo_data - Small data.table with raw combo data used for processing via gDR
  • small_data - Small data.table with raw data used for processing via gDR

On BioConductor:gDR-1.5.0(bioc 3.21)gDR-1.4.0(bioc 3.20)

softwaredataimportshinyapps

5.60 score 1 stars 7 scripts 106 downloads 1 exports 200 dependencies

Last updated 17 days agofrom:8e0f13da6c. Checks:OK: 2 WARNING: 3 ERROR: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 07 2024
R-4.5-winWARNINGNov 07 2024
R-4.5-linuxWARNINGNov 07 2024
R-4.4-winWARNINGNov 07 2024
R-4.4-macOKNov 07 2024
R-4.3-winERRORNov 07 2024
R-4.3-macERRORNov 07 2024

Exports:import_data

Dependencies:abindaskpassassertthatbackportsbase64encbenchBHBiobaseBiocBaseUtilsBiocGenericsBiocParallelbitbit64bitopsbootbroombslibBumpyMatrixcachemcarcarDatacaToolscelestialcellrangercheckmateclicliprclustercodetoolscolorspacecommonmarkcoopCoreGxcowplotcpp11crayoncrosstalkcurldata.tableDelayedArrayDerivdigestdoBydownloaderdplyrdrcDTevaluatefansifarverfastmapfastmatchfgseafontawesomeforcatsforeignformatRFormulafsfutile.loggerfutile.optionsgDRcoregDRimportgDRutilsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegplotsgtablegtoolshavenhighrhmshtmltoolshtmlwidgetshttpuvhttrigraphIRangesisobandjquerylibjsonlitejsonvalidateKernSmoothknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmalme4lsamagicaxismagrittrmapprojmapsmarrayMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrmultcompMultiAssayExperimentmunsellmvtnormNISTunitsnlmenloptrnnetnumDerivopensslopenxlsxpbkrtestPharmacoGxpianopillarpkgconfigplotrixplyrpracmaprettyunitsprofmemprogresspromisespurrrquantregR.methodsS3R.ooR.utilsR6RANNrappdirsRColorBrewerRcppRcppEigenreadrreadxlrelationsrematchreshape2riorlangrmarkdownS4ArraysS4VectorssandwichsassscalessetsshinyshinydashboardshinyjsslamsmsnowSnowballCsourcetoolsSparseArraySparseMstatmodstringistringrSummarizedExperimentsurvivalsysTH.datatibbletidyrtidyselecttinytextzdbUCSC.utilsutf8V8vctrsviridisLitevisNetworkvroomwithrwritexlxfunXMLxtableXVectoryamlzipzlibbioczoo

gDR suite

gDR team

Rendered fromgDR.Rmdusingknitr::rmarkdownon Nov 07 2024.

Last update: 2024-01-19
Started: 2021-03-03