Package: gDR 1.5.1

Arkadiusz Gladki

gDR: Umbrella package for R packages in the gDR suite

Package is a part of the gDR suite. It reexports functions from other packages in the gDR suite that contain critical processing functions and utilities. The vignette walks through the full processing pipeline for drug response analyses that the gDR suite offers.

Authors:Allison Vuong [aut], Bartosz Czech [aut], Arkadiusz Gladki [cre, aut], Marc Hafner [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut]

gDR_1.5.1.tar.gz
gDR_1.5.1.zip(r-4.5)gDR_1.5.1.zip(r-4.4)gDR_1.5.1.zip(r-4.3)
gDR_1.5.1.tgz(r-4.5-any)gDR_1.5.1.tgz(r-4.4-any)gDR_1.5.1.tgz(r-4.3-any)
gDR_1.5.1.tar.gz(r-4.5-noble)gDR_1.5.1.tar.gz(r-4.4-noble)
gDR_1.5.1.tgz(r-4.4-emscripten)gDR_1.5.1.tgz(r-4.3-emscripten)
gDR.pdf |gDR.html✨
gDR/json (API)
NEWS

# Install 'gDR' in R:
install.packages('gDR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/gdrplatform/gdr/issues

Pkgdown site:https://gdrplatform.github.io

Datasets:
  • small_combo_data - Small data.table with raw combo data used for processing via gDR
  • small_data - Small data.table with raw data used for processing via gDR

On BioConductor:gDR-1.5.1(bioc 3.21)gDR-1.4.0(bioc 3.20)

softwaredataimportshinyapps

5.38 score 1 stars 7 scripts 143 downloads 1 exports 202 dependencies

Last updated 4 months agofrom:8e0f13da6c. Checks:5 OK, 2 ERROR, 1 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 05 2025
R-4.5-winOKFeb 05 2025
R-4.5-macWARNINGFeb 05 2025
R-4.5-linuxOKFeb 05 2025
R-4.4-winOKFeb 05 2025
R-4.4-macOKFeb 05 2025
R-4.3-winERRORFeb 05 2025
R-4.3-macERRORJan 06 2025

Exports:import_data

Dependencies:abindaskpassassertthatbackportsbase64encbenchBHBiobaseBiocBaseUtilsBiocGenericsBiocParallelbitbit64bitopsbootbroombslibBumpyMatrixcachemcarcarDatacaToolscelestialcellrangercheckmateclicliprclustercodetoolscolorspacecommonmarkcoopCoreGxcowplotcpp11crayoncrosstalkcurldata.tableDelayedArrayDerivdigestdoBydownloaderdplyrdrcDTevaluatefansifarverfastmapfastmatchfgseafontawesomeforcatsforeignformatRFormulafsfutile.loggerfutile.optionsgDRcoregDRimportgDRutilsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegplotsgtablegtoolshavenhighrhmshtmltoolshtmlwidgetshttpuvhttrigraphIRangesisobandjquerylibjsonlitejsonvalidateKernSmoothknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmalme4lsamagicaxismagrittrmapprojmapsmarrayMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrmultcompMultiAssayExperimentmunsellmvtnormNISTunitsnlmenloptrnnetnumDerivopensslopenxlsxpbkrtestPharmacoGxpianopillarpkgconfigplotrixplyrpracmaprettyunitsprofmemprogresspromisespurrrquantregR.methodsS3R.ooR.utilsR6RANNrappdirsrbibutilsRColorBrewerRcppRcppEigenRdpackreadrreadxlreformulasrelationsrematchreshape2riorlangrmarkdownS4ArraysS4VectorssandwichsassscalessetsshinyshinydashboardshinyjsslamsmsnowSnowballCsourcetoolsSparseArraySparseMstatmodstringistringrSummarizedExperimentsurvivalsysTH.datatibbletidyrtidyselecttinytextzdbUCSC.utilsutf8V8vctrsviridisLitevisNetworkvroomwithrwritexlxfunXMLxtableXVectoryamlzipzoo

gDR suite

gDR team

Rendered fromgDR.Rmdusingknitr::rmarkdownon Feb 05 2025.

Last update: 2024-01-19
Started: 2021-03-03