Package: gDR 1.5.1

Arkadiusz Gladki

gDR: Umbrella package for R packages in the gDR suite

Package is a part of the gDR suite. It reexports functions from other packages in the gDR suite that contain critical processing functions and utilities. The vignette walks through the full processing pipeline for drug response analyses that the gDR suite offers.

Authors:Allison Vuong [aut], Bartosz Czech [aut], Arkadiusz Gladki [cre, aut], Marc Hafner [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut]

gDR_1.5.1.tar.gz
gDR_1.5.1.zip(r-4.5)gDR_1.5.1.zip(r-4.4)gDR_1.5.1.zip(r-4.3)
gDR_1.5.1.tgz(r-4.4-any)gDR_1.5.1.tgz(r-4.3-any)
gDR_1.5.1.tar.gz(r-4.5-noble)gDR_1.5.1.tar.gz(r-4.4-noble)
gDR_1.5.1.tgz(r-4.4-emscripten)gDR_1.5.1.tgz(r-4.3-emscripten)
gDR.pdf |gDR.html✨
gDR/json (API)
NEWS

# Install 'gDR' in R:
install.packages('gDR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/gdrplatform/gdr/issues

Pkgdown site:https://gdrplatform.github.io

Datasets:
  • small_combo_data - Small data.table with raw combo data used for processing via gDR
  • small_data - Small data.table with raw data used for processing via gDR

On BioConductor:gDR-1.5.1(bioc 3.21)gDR-1.4.0(bioc 3.20)

softwaredataimportshinyapps

5.56 score 1 stars 7 scripts 106 downloads 1 exports 200 dependencies

Last updated 2 months agofrom:8e0f13da6c. Checks:OK: 5 ERROR: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 07 2024
R-4.5-winOKDec 07 2024
R-4.5-linuxOKDec 07 2024
R-4.4-winOKDec 07 2024
R-4.4-macOKDec 07 2024
R-4.3-winERRORDec 07 2024
R-4.3-macERRORDec 07 2024

Exports:import_data

Dependencies:abindaskpassassertthatbackportsbase64encbenchBHBiobaseBiocBaseUtilsBiocGenericsBiocParallelbitbit64bitopsbootbroombslibBumpyMatrixcachemcarcarDatacaToolscelestialcellrangercheckmateclicliprclustercodetoolscolorspacecommonmarkcoopCoreGxcowplotcpp11crayoncrosstalkcurldata.tableDelayedArrayDerivdigestdoBydownloaderdplyrdrcDTevaluatefansifarverfastmapfastmatchfgseafontawesomeforcatsforeignformatRFormulafsfutile.loggerfutile.optionsgDRcoregDRimportgDRutilsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegplotsgtablegtoolshavenhighrhmshtmltoolshtmlwidgetshttpuvhttrigraphIRangesisobandjquerylibjsonlitejsonvalidateKernSmoothknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmalme4lsamagicaxismagrittrmapprojmapsmarrayMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrmultcompMultiAssayExperimentmunsellmvtnormNISTunitsnlmenloptrnnetnumDerivopensslopenxlsxpbkrtestPharmacoGxpianopillarpkgconfigplotrixplyrpracmaprettyunitsprofmemprogresspromisespurrrquantregR.methodsS3R.ooR.utilsR6RANNrappdirsRColorBrewerRcppRcppEigenreadrreadxlrelationsrematchreshape2riorlangrmarkdownS4ArraysS4VectorssandwichsassscalessetsshinyshinydashboardshinyjsslamsmsnowSnowballCsourcetoolsSparseArraySparseMstatmodstringistringrSummarizedExperimentsurvivalsysTH.datatibbletidyrtidyselecttinytextzdbUCSC.utilsutf8V8vctrsviridisLitevisNetworkvroomwithrwritexlxfunXMLxtableXVectoryamlzipzlibbioczoo

gDR suite

gDR team

Rendered fromgDR.Rmdusingknitr::rmarkdownon Dec 07 2024.

Last update: 2024-01-19
Started: 2021-03-03