NEWS

---

gDR 2026-11-03 (2026-11-03)

• fix the processing step of PRISM level 6 reports, which failed on input without durations

• add a report step to the provenance from extra_render_params$report_inputs_file, a list of the run's inputs

gDR 2026-11-02 (2026-11-02)

• add a note to the processing report when it leaves out data types it does not process, such as co-dilution

• add the optional treatment_time config key to the Incucyte report, the hour the treatment marker is drawn at

gDR 2026-10-30 (2026-10-30)

• use runDrugResponseProcessingPipeline() in the processing report and read its saved steps for the quality control
• fix the missing import step in the provenance of the processing report's MAE
• bump the gDRcore requirement to 1.11.29, which exports read_intermediate_data()

gDR 2026-10-26 (2026-10-26)

• correct the Incucyte report wording on rate_0, the control rate pooled over all plates

gDR 2026-10-23 (2026-10-23)

• fix the Incucyte error bars to use the SD of growth rates normalized to the control of the same plate

• add a period_labels key to the Incucyte analysis config to name the growth-rate periods in the plots
• fix Incucyte period labels hidden behind the curves in the time-course plots

• add a growth_metric key to the Incucyte analysis config to plot GR values instead of normalized growth rates

• prevent the removal of the rendered report when only the publication step fails, and point current to it

gDR 2026-10-21 (2026-10-21)

• add a "How These Numbers Were Produced" section to the processing reports, listing the recorded fits and steps

gDR 2026-10-19 (2026-10-19)

• fix the clipped legend on Incucyte analysis pages with many doses by showing one legend per page

gDR 2026-10-08 (2026-10-08)

• update authors data

gDR 2026-10-03 (2026-10-03)

• use qualified calls for the fitting-layer functions the Incucyte report templates rely on

gDR 2026-09-30 (2026-09-30)

• read the Incucyte analysis configuration supplied for the run, and fail if it cannot be staged
• fix the silent removal of a path argument that resolves to no file

gDR 2026-09-24 (2026-09-24)

• fix rendering of the rowData and colData tables in the processing report on Bioconductor 3.24

gDR 2026-09-19 (2026-09-19)

• fix detection of an existing report so that push-only runs can start

gDR 2026-09-14 (2026-09-14)

• drop gDRplots from Suggests, since it has no CRAN or Bioconductor release and blocks dependency resolution
• document the gDRplots run-time requirement of the bundled report templates in run_report()

gDR 2026-09-11 (2026-09-11)

• add the five Incucyte helpers the Incucyte report templates call, so those templates run outside a deployment

gDR 2026-09-01 (2026-09-01)

• add run_report(), a deployment-agnostic driver for the report pipeline, together with its report templates

gDR 2026-06-08 (2026-06-08)

• add custom annotation support to import_data

gDR 2026-05-26 (2026-05-26)

• apply updated gDRstyle rules

gDR 2026-04-29 (2026-04-29)

• synchronize Bioconductor and GitHub versioning

gDR 2025-10-30 (2025-10-30)

• synchronize Bioconductor and GitHub versioning

gDR 2025-06-11 (2025-06-11)

• update installation instructions

gDR 2024-11-05 (2024-11-05)

• synchronize Bioconductor and GitHub versioning

gDR 2024-05-27 (2024-05-27)

• synchronize Bioconductor and GitHub versioning

gDR 2024-05-15 (2024-05-15)

• fix check notes

gDR 2024-05-08 (2024-05-08)

• fix typo

gDR 2024-02-26 (2024-02-26)

• improve pkgdown site
  • improved references
  • valid NEWS.md

gDR 2024-02-12 (2024-02-12)

• make documentation compatible with pkdgdown

gDR 2024-01-22 (2024-01-22)

• add new description fields

gDR 2024-01-19 (2024-01-19)

• update package vignette

gDR 2023-11-22 (2023-11-22)

• sync main with devel branch

gDR 2023-10-24 (2023-10-24)

• release Bioc 3.18

• prerelease Bioc 3.18

gDR 2023-10-18 (2023-10-18)

• adjust NEWS to Bioc format

gDR 2023-08-17 (2023-08-17)

• update README

• clean-up
• update documentation
• simplify Docker-based installation

gDR 2023-05-22 (2023-05-22)

• format the vignette with BiocStyle

gDR 2023-05-11 (2023-05-11)

• fix related with data.table

gDR 2023-04-20 (2023-04-20)

• switch to OSI license

gDR 2023-04-13 (2023-04-13)

• update documentation - Bioc-compatibility

gDR 2023-04-07 (2023-04-07)

• update maintainer

gDR 2023-04-04 (2023-04-04)

• update requirements - gDRcore

gDR 2023-03-23 (2023-03-23)

• switch to Bioc compatible versioning

• drop gDRcomponents dependency

gDR 2023-03-13 (2023-03-13)

• bugfix - assure proper path to shared_dir in the vignette

gDR 2023-03-08 (2023-03-08)

• add functions from gDRcomponents

gDR 2023-02-28 (2023-02-28)

• update vignette

gDR 2023-01-18 (2023-01-18)

• fixed NOTES

gDR 2022-12-15 (2022-12-15)

• update deps

gDR 2022-10-05 (2022-10-05)

• add BioCparallel and kableExtra as dep

gDR 2022-06-02 (2022-06-02)

• release 1.3.0

gDR 2022-04-21 (2022-04-21)

• update unit tests

• remove redundant function argument

gDR 2022-04-20 (2022-04-20)

• adjust for removal of large RDS files from gDRtestData

gDR 2021-09-13 (2021-09-13)

• update CODEOWNERS to use teams

• remove unnecessary exports

• update version and package dependencies

• update vignette

gDR 2021-06-25 (2021-06-25)

• update version and package dependencies

• update roxygen documentation

gDR 2021-06-24 (2021-06-24)

• add example data

gDR 2021-02-03 (2021-02-03)

• initial version