Package: fourDNData 1.13.0

Jacques Serizay

fourDNData: 4DN data package

fourDNData is a data package giving programmatic access to Hi-C contact matrices uniformly processed by the [4DN consortium](https://www.4dnucleome.org/). The matrices are available in the multi-resolution `.mcool` format.

Authors:Jacques Serizay [aut, cre]

fourDNData_1.13.0.tar.gz
fourDNData_1.13.0.tar.gz(r-4.7-any)fourDNData_1.13.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
fourDNData/json (API)

# Install 'fourDNData' in R:

install.packages('fourDNData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/js2264/fourdndata/issues

On BioConductor:fourDNData-1.13.0(data/experiment 3.24)fourDNData-1.12.0(data/experiment 3.23)

experimentdata sequencingdata datapkg

4.82 score 2 stars 1 packages 11 scripts 3 exports 77 dependencies

Last updated from:61c9833235. Checks:1 NOTE, 3 OK. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	NOTE	149
linux-devel	OK	253
source / vignettes	OK	273
linux-release	OK	264

Exports:fourDNData fourDNDataCache fourDNHiCExperiment

Dependencies:abind askpass BH Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocIO biocmake BiocParallel bit bit64 blob cachem cli codetools cpp11 crayon curl DBI dbplyr DelayedArray dir.expiry dplyr fastmap filelock formatR futile.logger futile.options generics GenomicRanges glue HiCExperiment hms httr2 InteractionSet IRanges lambda.r lattice lifecycle magrittr Matrix MatrixGenerics matrixStats memoise openssl pillar pkgconfig prettyunits progress purrr R6 Rcpp rhdf5 rhdf5filters Rhdf5lib rlang RSQLite S4Arrays S4Vectors Seqinfo snow SparseArray strawr stringi stringr SummarizedExperiment sys tibble tidyr tidyselect tzdb utf8 vctrs vroom withr XVector

fourDNData

Introduction | Installation | HiCExperiment and fourDNData | Session info

Rendered fromfourDNData.Rmdusingknitr::rmarkdown

Last update: 2023-01-30
Started: 2022-12-02

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
fourDNData	fourDNData fourDNHiCExperiment
Manage cache / download files from the 4DN data portal	fourDNDataCache