Package: flowVS 1.45.0

Ariful Azad

flowVS: Variance stabilization in flow cytometry (and microarrays)

Per-channel variance stabilization from a collection of flow cytometry samples by Bertlett test for homogeneity of variances. The approach is applicable to microarrays data as well.

Authors:Ariful Azad

flowVS_1.45.0.tar.gz
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flowVS_1.45.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
flowVS/json (API)

# Install 'flowVS' in R:

install.packages('flowVS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

HD - Sample flow cytometry data from healthy individuals

On BioConductor:flowVS-1.45.0(bioc 3.24)flowVS-1.44.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncology flowcytometry cellbasedassays microarray

3.86 score 12 scripts 3 mentions 5 exports 93 dependencies

Last updated from:3a5208d882. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	213
linux-devel-x86_64	NOTE	259
source / vignettes	OK	335
linux-release-x86_64	NOTE	324
macos-release-arm64	NOTE	122
macos-oldrel-arm64	NOTE	115
windows-devel	NOTE	159
windows-release	NOTE	187
windows-oldrel	NOTE	185
wasm-release	OK	159

Exports:estParamFlowVS lymphs microVS plotMeanSd transFlowVS

Dependencies:abind ash BH Biobase BiocGenerics biocmake bitops cli clue cluster colorspace corpcor cpp11 cytolib data.table DelayedArray deldir DEoptimR deSolve dir.expiry dplyr farver fda fds filelock flowCore flowStats flowViz flowWorkspace FNN generics ggplot2 glue graph gtable hdrcde hexbin IDPmisc interp IRanges isoband jpeg kernlab KernSmooth ks labeling lattice latticeExtra lifecycle locfit magrittr MASS Matrix MatrixGenerics matrixStats mclust mgcv mnormt multicool mvtnorm ncdfFlow nlme pcaPP pillar pkgconfig png pracma R6 rainbow RBGL RColorBrewer Rcpp RcppEigen RCurl Rgraphviz Rhdf5lib rlang robustbase RProtoBufLib rrcov S4Arrays S4Vectors S7 scales SparseArray tibble tidyselect utf8 vctrs viridisLite withr XML XVector

flowVS: Cell population matching and meta-clustering in Flow Cytometry

Licensing | Variance stabilization in flow cytometry | Examples | Variance stabilization in microarray data | Sessioninfo

Rendered fromflowVS.Rnwusingknitr::knitr

Last update: 2021-04-02
Started: 2015-04-07

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
flowVS: Variance stabilization in flow cytometry (and microarrays).	flowVS-package flowVS
Estimate optimum parameters for per-channel within-population variance stabilization.	estParamFlowVS
Sample flow cytometry data from healthy individuals	HD
Identify lymphocyte cells from a flow cytometry sample.	lymphs
Variance stabilization for microarray data.	microVS
Plot row standard deviations versus row means (modified from vsn package)	plotMeanSd
Transform a flowSet by asinh transformation.	transFlowVS