Package: flowGate 1.13.1

Introduction | Setting up flowGate | Installing from Bioconductor | Installing from GitHub | Preparing your cytometry data | Assemble a flowSet from seperate .FCS files | Working with large flowSets | Convert the flowSet to a GatingSet | Compensate the data | Using acquisition-defined compensation | Creating a new compensation matrix from single-colour controls | Putting it all together---create an import function | What about transforming the data? | Interactive gating | Draw your first gate | Other notes about gating | Plot the data with the new gate | Draw more gates | Draw the last quadrant gate | Save your GatingSet object | Rapidly Apply Gating Strategies | Define your gating strategy | Applying the gating strategy | Adding unchanging parameters | Data Export---Images and Summary Statistics | Plot data nicely | Retrieving summary statistics | Where to go from here | Acknowledgements | Session Info