Package: flowGate 1.7.0
Andrew Wight
flowGate: Interactive Cytometry Gating in R
flowGate adds an interactive Shiny app to allow manual GUI-based gating of flow cytometry data in R. Using flowGate, you can draw 1D and 2D span/rectangle gates, quadrant gates, and polygon gates on flow cytometry data by interactively drawing the gates on a plot of your data, rather than by specifying gate coordinates. This package is especially geared toward wet-lab cytometerists looking to take advantage of R for cytometry analysis, without necessarily having a lot of R experience.
Authors:
flowGate_1.7.0.tar.gz
flowGate_1.7.0.zip(r-4.5)flowGate_1.7.0.zip(r-4.4)flowGate_1.7.0.zip(r-4.3)
flowGate_1.7.0.tgz(r-4.4-any)flowGate_1.7.0.tgz(r-4.3-any)
flowGate_1.7.0.tar.gz(r-4.5-noble)flowGate_1.7.0.tar.gz(r-4.4-noble)
flowGate_1.7.0.tgz(r-4.4-emscripten)flowGate_1.7.0.tgz(r-4.3-emscripten)
flowGate.pdf |flowGate.html✨
flowGate/json (API)
NEWS
| # Install 'flowGate' in R: |
| install.packages('flowGate', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:flowGate-1.5.0(bioc 3.20)flowGate-1.4.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwareworkflowstepflowcytometrypreprocessingimmunooncologydataimport
Last updated 23 days agofrom:abd76a41fa. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 30 2024 |
| R-4.5-win | NOTE | Oct 30 2024 |
| R-4.5-linux | NOTE | Oct 30 2024 |
| R-4.4-win | NOTE | Oct 30 2024 |
| R-4.4-mac | NOTE | Oct 30 2024 |
| R-4.3-win | NOTE | Oct 30 2024 |
| R-4.3-mac | NOTE | Oct 30 2024 |
Exports:gs_apply_gating_strategygs_gate_interactivegs_gate_transform_interactive
Dependencies:abindbase64encBHBiobaseBiocGenericsBiocManagerbslibcachemclicolorspacecommonmarkcpp11crayoncytolibdata.tableDelayedArraydigestdplyrfansifarverfastmapflowCoreflowWorkspacefontawesomefsgenericsggcytoggplot2gluegraphgridExtragtablehexbinhtmltoolshttpuvIRangesisobandjquerylibjsonlitelabelinglaterlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellncdfFlownlmepillarpkgconfigplyrpromisespurrrR6rappdirsRBGLRColorBrewerRcppRgraphvizRhdf5librlangRProtoBufLibS4ArraysS4VectorssassscalesshinysourcetoolsSparseArraytibbletidyselectutf8vctrsviridisLitewithrXMLxtableXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Sequentially apply a manual gating strategy to a GatingSet or list | gs_apply_gating_strategy |
| Interactive Manual Gating | gs_gate_interactive |
| Interactively adjust a gate from a GatingSet | gs_gate_transform_interactive |
