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  "Type": "Package",
  "Title": "Interactive Cytometry Gating in R",
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  "Authors@R": "c(person(\"Andrew\", \n\"Wight\",\nemail = \"andrew.wight10@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-3116-8722\")),\nperson(\"Harvey\",\n\"Cantor\",\nemail = \"Harvey_Cantor@dfci.harvard.edu\",\nrole = c(\"aut\", \"ldr\"),\ncomment = c(ORCID = \"0000-0002-3313-2478\")))",
  "Description": "flowGate adds an interactive Shiny app to allow manual\nGUI-based gating of flow cytometry data in R. Using flowGate,\nyou can draw 1D and 2D span/rectangle gates, quadrant gates,\nand polygon gates on flow cytometry data by interactively\ndrawing the gates on a plot of your data, rather than by\nspecifying gate coordinates. This package is especially geared\ntoward wet-lab cytometerists looking to take advantage of R for\ncytometry analysis, without necessarily having a lot of R\nexperience.",
  "License": "MIT + file LICENSE",
  "URL": "https://www.bioconductor.org/packages/release/bioc/html/flowGate.html",
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  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-07-02 17:43:42 UTC",
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      "source": "flowGate.Rmd",
      "filename": "flowGate.html",
      "title": "flowGate",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Setting up flowGate",
        "Installing from Bioconductor",
        "Installing from GitHub",
        "Preparing your cytometry data",
        "Assemble a flowSet from seperate .FCS files",
        "Working with large flowSets",
        "Convert the flowSet to a GatingSet",
        "Compensate the data",
        "Using acquisition-defined compensation",
        "Creating a new compensation matrix from single-colour controls",
        "Putting it all together---create an import function",
        "What about transforming the data?",
        "Interactive gating",
        "Draw your first gate",
        "Other notes about gating",
        "Plot the data with the new gate",
        "Draw more gates",
        "Draw the last quadrant gate",
        "Save your GatingSet object",
        "Rapidly Apply Gating Strategies",
        "Define your gating strategy",
        "Applying the gating strategy",
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        "Data Export---Images and Summary Statistics",
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        "Retrieving summary statistics",
        "Where to go from here",
        "Acknowledgements",
        "Session Info"
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