Package: flowFP 1.65.0
Herb Holyst
flowFP: Fingerprinting for Flow Cytometry
Fingerprint generation of flow cytometry data, used to facilitate the application of machine learning and datamining tools for flow cytometry.
Authors:
flowFP_1.65.0.tar.gz
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flowFP.pdf |flowFP.html✨
flowFP/json (API)
NEWS
| # Install 'flowFP' in R: |
| install.packages('flowFP', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:flowFP-1.63.0(bioc 3.20)flowFP-1.62.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
flowcytometrycellbasedassaysclusteringvisualization
Last updated 23 days agofrom:a7c3d15e3c. Checks:OK: 1 NOTE: 4 WARNING: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 30 2024 |
| R-4.5-win-x86_64 | NOTE | Oct 30 2024 |
| R-4.5-linux-x86_64 | NOTE | Oct 30 2024 |
| R-4.4-win-x86_64 | NOTE | Oct 30 2024 |
| R-4.4-mac-x86_64 | WARNING | Oct 30 2024 |
| R-4.4-mac-aarch64 | WARNING | Oct 30 2024 |
| R-4.3-win-x86_64 | NOTE | Oct 30 2024 |
| R-4.3-mac-x86_64 | WARNING | Oct 30 2024 |
| R-4.3-mac-aarch64 | WARNING | Oct 30 2024 |
Exports:appendbinBoundarycountsflowFPflowFPModelflowFPPlexhasClassesis.flowFPis.flowFPModelis.flowFPPlexnamenFeaturesnInstancesnRecursionsnRecursions<-parametersplotsampleClassessampleClasses<-sampleNamesshowsummarytags
Dependencies:BHBiobaseBiocGenericscpp11cytolibdeldirflowCoreflowVizhexbinIDPmiscinterpjpegKernSmoothlatticelatticeExtraMASSmatrixStatspngRColorBrewerRcppRcppEigenRhdf5libRProtoBufLibS4Vectors
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Package overview | flowFP-package |
| Indexing methods for flowFP and flowFPPlex | [,flowFP,character-method [,flowFP,numeric-method [,flowFPPlex,ANY-method [-methods [[,flowFPPlex,ANY-method [[-methods [[<-,flowFPPlex,numeric,ANY,flowFP-method |
| Methods to append flowFP fingerprints to a flowFPPlex | append,flowFPPlex,flowFP-method append,flowFPPlex,flowFPPlex-method append,flowFPPlex,list-method append-methods |
| Return bin boundaries for a flowFPModel | binBoundary binBoundary,flowFP-method binBoundary,flowFPModel-method binBoundary-methods |
| Method for getting fingerprint data. | counts counts,flowFP-method counts,flowFPPlex-method |
| Fingerprint constructor | flowFP |
| Fingerprint class description. | flowFP-class |
| Fingerprint model constructor | flowFPModel |
| Fingerprint model class description. | flowFPModel-class |
| Fingerprint collection constructor. | flowFPPlex |
| Fingerprint collection class description. | flowFPPlex-class |
| Example FCS flowSet | fs1 |
| Example FCS flowSet | fs2 |
| Returns TRUE if the flowFP has a class factor for its instances | hasClasses hasClasses,flowFP-method hasClasses,flowFPPlex-method hasClasses-methods |
| Test to see if object is a flowFP | is.flowFP |
| Test to see if object is a flowFPModel | is.flowFPModel |
| Test to see if object is a flowFPPlex | is.flowFPPlex |
| The number of fingerprints in a flowFPPlex | length,flowFPPlex-method length-methods length<-,flowFPPlex,numeric-method |
| Get Model Name | name name,flowFP-method name,flowFPModel-method name,flowFPPlex-method name-methods |
| Returns the number of features in an object. | nFeatures nFeatures,flowFP-method nFeatures,flowFPModel-method nFeatures,flowFPPlex-method nFeatures-methods |
| Returns the number of instances in an object. | nInstances nInstances,flowFP-method nInstances,flowFPPlex-method nInstances-methods |
| Methods to set or get nRecursions | nRecursions nRecursions,flowFP-method nRecursions,flowFPModel-method nRecursions,flowFPPlex-method nRecursions-methods nRecursions<- nRecursions<-,flowFP,numeric-method nRecursions<-,flowFPModel,numeric-method |
| Return the parameters considered for fingerprinting | parameters,flowFP-method parameters,flowFPModel-method parameters-methods |
| 96 well plate data. | plate |
| Methods for visualizing flowFP objects | plot,flowFP,flowFrame-method plot,flowFP,flowSet-method plot,flowFP,missing-method plot,flowFPModel,flowFrame-method plot,flowFPModel,flowSet-method plot,flowFPModel,missing-method plot,flowFPPlex,missing-method plot-methods |
| Gets/Sets the sample classes for a fingerprint. | sampleClasses sampleClasses,flowFP-method sampleClasses,flowFPPlex-method sampleClasses-methods sampleClasses<- sampleClasses<-,flowFP-method sampleClasses<-,flowFPPlex-method |
| Methods to return sample names from a flowFP object. | sampleNames sampleNames,flowFP-method sampleNames,flowFPPlex-method sampleNames-methods |
| Methods to view flowFP objects | show,flowFP-method show,flowFPModel-method show,flowFPPlex-method show-methods |
| Summerizes a flowFP object. | summary,flowFP-method summary-methods |
| Returns tags from a flowFP object. | tags tags,flowFP-method tags-methods |