Package: flowFP 1.71.0
Herb Holyst
flowFP: Fingerprinting for Flow Cytometry
Fingerprint generation of flow cytometry data, used to facilitate the application of machine learning and datamining tools for flow cytometry.
Authors:
flowFP_1.71.0.tar.gz
flowFP_1.71.0.zip(r-4.7)flowFP_1.71.0.zip(r-4.6)flowFP_1.71.0.zip(r-4.5)
flowFP_1.71.0.tgz(r-4.6-x86_64)flowFP_1.71.0.tgz(r-4.6-arm64)flowFP_1.71.0.tgz(r-4.5-x86_64)flowFP_1.71.0.tgz(r-4.5-arm64)
flowFP_1.71.0.tar.gz(r-4.7-arm64)flowFP_1.71.0.tar.gz(r-4.7-x86_64)flowFP_1.71.0.tar.gz(r-4.6-arm64)flowFP_1.71.0.tar.gz(r-4.6-x86_64)
flowFP_1.71.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
flowFP/json (API)
NEWS
| # Install 'flowFP' in R: |
| install.packages('flowFP', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:flowFP-1.71.0(bioc 3.24)flowFP-1.70.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
flowcytometrycellbasedassaysclusteringvisualization
Last updated from:4e1e604258. Checks:1 ERROR, 7 NOTE, 2 OK, 4 WARNING. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 162 | ||
| linux-devel-arm64 | NOTE | 166 | ||
| linux-devel-x86_64 | NOTE | 184 | ||
| source / vignettes | OK | 188 | ||
| linux-release-arm64 | NOTE | 164 | ||
| linux-release-x86_64 | NOTE | 182 | ||
| macos-release-arm64 | WARNING | 191 | ||
| macos-release-x86_64 | WARNING | 416 | ||
| macos-oldrel-arm64 | WARNING | 147 | ||
| macos-oldrel-x86_64 | WARNING | 305 | ||
| windows-devel | NOTE | 146 | ||
| windows-release | NOTE | 139 | ||
| windows-oldrel | NOTE | 151 | ||
| wasm-release | OK | 120 |
Exports:appendbinBoundarycountsflowFPflowFPModelflowFPPlexhasClassesis.flowFPis.flowFPModelis.flowFPPlexnamenFeaturesnInstancesnRecursionsnRecursions<-parametersplotsampleClassessampleClasses<-sampleNamesshowsummarytags
Dependencies:BHBiobaseBiocGenericsbiocmakecpp11cytolibdeldirdir.expiryfilelockflowCoreflowVizgenericshexbinIDPmiscinterpjpegKernSmoothlatticelatticeExtraMASSmatrixStatspngRColorBrewerRcppRcppEigenRhdf5libRProtoBufLibS4Vectors
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Package overview | flowFP-package |
| Indexing methods for flowFP and flowFPPlex | [,flowFP,character-method [,flowFP,numeric-method [,flowFPPlex,ANY-method [-methods [[,flowFPPlex,ANY-method [[-methods [[<-,flowFPPlex,numeric,ANY,flowFP-method |
| Methods to append flowFP fingerprints to a flowFPPlex | append,flowFPPlex,flowFP-method append,flowFPPlex,flowFPPlex-method append,flowFPPlex,list-method append-methods |
| Return bin boundaries for a flowFPModel | binBoundary binBoundary,flowFP-method binBoundary,flowFPModel-method binBoundary-methods |
| Method for getting fingerprint data. | counts counts,flowFP-method counts,flowFPPlex-method |
| Fingerprint constructor | flowFP |
| Fingerprint class description. | flowFP-class |
| Fingerprint model constructor | flowFPModel |
| Fingerprint model class description. | flowFPModel-class |
| Fingerprint collection constructor. | flowFPPlex |
| Fingerprint collection class description. | flowFPPlex-class |
| Example FCS flowSet | fs1 |
| Example FCS flowSet | fs2 |
| Returns TRUE if the flowFP has a class factor for its instances | hasClasses hasClasses,flowFP-method hasClasses,flowFPPlex-method hasClasses-methods |
| Test to see if object is a flowFP | is.flowFP |
| Test to see if object is a flowFPModel | is.flowFPModel |
| Test to see if object is a flowFPPlex | is.flowFPPlex |
| The number of fingerprints in a flowFPPlex | length,flowFPPlex-method length-methods length<-,flowFPPlex,numeric-method |
| Get Model Name | name name,flowFP-method name,flowFPModel-method name,flowFPPlex-method name-methods |
| Returns the number of features in an object. | nFeatures nFeatures,flowFP-method nFeatures,flowFPModel-method nFeatures,flowFPPlex-method nFeatures-methods |
| Returns the number of instances in an object. | nInstances nInstances,flowFP-method nInstances,flowFPPlex-method nInstances-methods |
| Methods to set or get nRecursions | nRecursions nRecursions,flowFP-method nRecursions,flowFPModel-method nRecursions,flowFPPlex-method nRecursions-methods nRecursions<- nRecursions<-,flowFP,numeric-method nRecursions<-,flowFPModel,numeric-method |
| Return the parameters considered for fingerprinting | parameters,flowFP-method parameters,flowFPModel-method parameters-methods |
| 96 well plate data. | plate |
| Methods for visualizing flowFP objects | plot,flowFP,flowFrame-method plot,flowFP,flowSet-method plot,flowFP,missing-method plot,flowFPModel,flowFrame-method plot,flowFPModel,flowSet-method plot,flowFPModel,missing-method plot,flowFPPlex,missing-method plot-methods |
| Gets/Sets the sample classes for a fingerprint. | sampleClasses sampleClasses,flowFP-method sampleClasses,flowFPPlex-method sampleClasses-methods sampleClasses<- sampleClasses<-,flowFP-method sampleClasses<-,flowFPPlex-method |
| Methods to return sample names from a flowFP object. | sampleNames sampleNames,flowFP-method sampleNames,flowFPPlex-method sampleNames-methods |
| Methods to view flowFP objects | show,flowFP-method show,flowFPModel-method show,flowFPPlex-method show-methods |
| Summerizes a flowFP object. | summary,flowFP-method summary-methods |
| Returns tags from a flowFP object. | tags tags,flowFP-method tags-methods |