{ "_id": "6a61d5c4768d0b54cfc795d3", "Package": "flowFP", "Type": "Package", "Title": "Fingerprinting for Flow Cytometry", "Version": "1.71.0", "Author": "Herb Holyst , Wade Rogers\n", "Date": "2009", "Maintainer": "Herb Holyst , Wade Rogers\n", "Description": "Fingerprint generation of flow cytometry data, used to\nfacilitate the application of machine learning and datamining\ntools for flow cytometry.", "Collate": "AllClasses.R flowFP-utils.R flowFPModel.R flowFP.R\nflowFPPlex.R plot-model.R plot-utils.R plot-fancy.R\nplot-plate.R plot-qc.R plot-tangle.R plot-stack.R plot-grid.R\nAllGenerics.R", "LazyLoad": "TRUE", "License": "Artistic-2.0", "Packaged": { "Date": "2026-07-23 08:40:16 UTC", "User": "root" }, "biocViews": "FlowCytometry, CellBasedAssays, Clustering, Visualization", "NeedsCompilation": "yes", "Config/pak/sysreqs": "libjpeg-dev libpng-dev libssl-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:34:01 UTC", "RemoteUrl": "https://github.com/bioc/flowFP", "RemoteRef": "HEAD", "RemoteSha": "4e1e604258ea4507bb85dfc9b496f9ce8ddf48be", "_user": "bioc", "_type": "src", "_file": "flowFP_1.71.0.tar.gz", "_fileid": "https://r2.ropensci.org/b056990bc59ea17c298f58265878eb08f8a471010613ba7205447854c9873c2e", "_filesize": 5564371, "_sha256": "b056990bc59ea17c298f58265878eb08f8a471010613ba7205447854c9873c2e", "_expires": "2026-10-31T08:49:59.000Z", "_created": "2026-07-23T08:40:16.000Z", "_published": "2026-07-23T08:50:12.310Z", "_bioccheck": { "error": 2, "warning": 7, "note": 16 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/29991676080", "_status": "success", "_upstream": "https://github.com/bioc/flowFP", "_commit": { "id": "4e1e604258ea4507bb85dfc9b496f9ce8ddf48be", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379641 }, "_maintainer": { "name": "Herb Holyst", "email": "wade.rogers@spcytomics.com" }, "_distro": "resolute", "_jobs": [ { "job": 89156479996, "time": 164, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "8557449847" }, { "job": 89156480143, "time": 161, "config": "linux-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "8557448977" }, { "job": 89156480130, "time": 222, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "8557469910" }, { "job": 89156480103, "time": 173, "config": "linux-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "8557452780" }, { "job": 89156480109, "time": 204, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "8557463022" }, { "job": 89156480156, "time": 141, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "8557526975" }, { "job": 89156480054, "time": 217, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "8557573875" }, { "job": 89156480166, "time": 125, "config": "macos-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "8557523386" }, { "job": 89156480050, "time": 244, "config": "macos-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "8557594636" }, { "job": 89155792403, "time": 257, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8557394342" }, { "job": 89156480006, "time": 119, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8557435358" }, { "job": 89156480053, "time": 162, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "8557449042" }, { "job": 89156480074, "time": 161, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "8557448611" }, { "job": 89156480055, "time": 135, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "8557440623" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "flowCore", "role": "Depends" }, { "package": "flowViz", "role": "Depends" }, { "package": "Biobase", "role": "Imports" }, { "package": "BiocGenerics", "version": ">= 0.1.6", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "stats4", "role": "Imports" }, { "package": "RUnit", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 2, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.71.0", "bioc": "3.24" }, { "branch": "release", "version": "1.70.0", "bioc": "3.23" } ], "_topics": [ "flowcytometry", "cellbasedassays", "clustering", "visualization" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 450, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 630, "source": "https://www.bioconductor.org/packages/stats/bioc/flowFP" }, "_mentions": 4, "_searchresults": 11, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/flowFP.html", "extra/NEWS.html", "extra/NEWS.txt", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "append", "binBoundary", "counts", "flowFP", "flowFPModel", "flowFPPlex", "hasClasses", "is.flowFP", "is.flowFPModel", "is.flowFPPlex", "name", "nFeatures", "nInstances", "nRecursions", "nRecursions<-", "parameters", "plot", "sampleClasses", "sampleClasses<-", "sampleNames", "show", "summary", "tags" ], "_datasets": [ { "name": "fs1", "title": "Example FCS flowSet", "object": "fs1", "file": "fs1.rda", "class": [ "flowSet" ], "fields": [], "table": false, "tojson": false }, { "name": "fs2", "title": "Example FCS flowSet", "object": "fs2", "file": "fs2.rda", "class": [ "flowSet" ], "fields": [], "table": false, "tojson": false }, { "name": "plate", "title": "96 well plate data.", "object": "plate", "file": "plate.rda", "class": [ "flowSet" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "flowFP-package", "title": "Package overview", "topics": [ "flowFP-package" ] }, { "page": "index-methods", "title": "Indexing methods for flowFP and flowFPPlex", "topics": [ "[,flowFP,character-method", "[,flowFP,numeric-method", "[,flowFPPlex,ANY-method", "[-methods", "[[,flowFPPlex,ANY-method", "[[-methods", "[[<-,flowFPPlex,numeric,ANY,flowFP-method" ] }, { "page": "append-methods", "title": "Methods to append flowFP fingerprints to a flowFPPlex", "topics": [ "append,flowFPPlex,flowFP-method", "append,flowFPPlex,flowFPPlex-method", "append,flowFPPlex,list-method", "append-methods" ] }, { "page": "binBoundary-methods", "title": "Return bin boundaries for a flowFPModel", "topics": [ "binBoundary", "binBoundary,flowFP-method", "binBoundary,flowFPModel-method", "binBoundary-methods" ] }, { "page": "counts-methods", "title": "Method for getting fingerprint data.", "topics": [ "counts", "counts,flowFP-method", "counts,flowFPPlex-method" ] }, { "page": "flowFP", "title": "Fingerprint constructor", "topics": [ "flowFP" ] }, { "page": "flowFP-class", "title": "Fingerprint class description.", "topics": [ "flowFP-class" ] }, { "page": "flowFPModel", "title": "Fingerprint model constructor", "topics": [ "flowFPModel" ] }, { "page": "flowFPModel-class", "title": "Fingerprint model class description.", "topics": [ "flowFPModel-class" ] }, { "page": "flowFPPlex", "title": "Fingerprint collection constructor.", "topics": [ "flowFPPlex" ] }, { "page": "flowFPPlex-class", "title": "Fingerprint collection class description.", "topics": [ "flowFPPlex-class" ] }, { "page": "fs1", "title": "Example FCS flowSet", "topics": [ "fs1" ] }, { "page": "fs2", "title": "Example FCS flowSet", "topics": [ "fs2" ] }, { "page": "hasClasses-methods", "title": "Returns TRUE if the flowFP has a class factor for its instances", "topics": [ "hasClasses", "hasClasses,flowFP-method", "hasClasses,flowFPPlex-method", "hasClasses-methods" ] }, { "page": "is.flowFP", "title": "Test to see if object is a flowFP", "topics": [ "is.flowFP" ] }, { "page": "is.flowFPModel", "title": "Test to see if object is a flowFPModel", "topics": [ "is.flowFPModel" ] }, { "page": "is.flowFPPlex", "title": "Test to see if object is a flowFPPlex", "topics": [ "is.flowFPPlex" ] }, { "page": "length-methods", "title": "The number of fingerprints in a flowFPPlex", "topics": [ "length,flowFPPlex-method", "length-methods", "length<-,flowFPPlex,numeric-method" ] }, { "page": "name-methods", "title": "Get Model Name", "topics": [ "name", "name,flowFP-method", "name,flowFPModel-method", "name,flowFPPlex-method", "name-methods" ] }, { "page": "nFeatures-methods", "title": "Returns the number of features in an object.", "topics": [ "nFeatures", "nFeatures,flowFP-method", "nFeatures,flowFPModel-method", "nFeatures,flowFPPlex-method", "nFeatures-methods" ] }, { "page": "nInstances-methods", "title": "Returns the number of instances in an object.", "topics": [ "nInstances", "nInstances,flowFP-method", "nInstances,flowFPPlex-method", "nInstances-methods" ] }, { "page": "nRecursions-methods", "title": "Methods to set or get nRecursions", "topics": [ "nRecursions", "nRecursions,flowFP-method", "nRecursions,flowFPModel-method", "nRecursions,flowFPPlex-method", "nRecursions-methods", "nRecursions<-", "nRecursions<-,flowFP,numeric-method", "nRecursions<-,flowFPModel,numeric-method" ] }, { "page": "parameters-methods", "title": "Return the parameters considered for fingerprinting", "topics": [ "parameters,flowFP-method", "parameters,flowFPModel-method", "parameters-methods" ] }, { "page": "plate", "title": "96 well plate data.", "topics": [ "plate" ] }, { "page": "plot-methods", "title": "Methods for visualizing flowFP objects", "topics": [ "plot,flowFP,flowFrame-method", "plot,flowFP,flowSet-method", "plot,flowFP,missing-method", "plot,flowFPModel,flowFrame-method", "plot,flowFPModel,flowSet-method", "plot,flowFPModel,missing-method", "plot,flowFPPlex,missing-method", "plot-methods" ] }, { "page": "sampleClasses-methods", "title": "Gets/Sets the sample classes for a fingerprint.", "topics": [ "sampleClasses", "sampleClasses,flowFP-method", "sampleClasses,flowFPPlex-method", "sampleClasses-methods", "sampleClasses<-", "sampleClasses<-,flowFP-method", "sampleClasses<-,flowFPPlex-method" ] }, { "page": "sampleNames-methods", "title": "Methods to return sample names from a flowFP object.", "topics": [ "sampleNames", "sampleNames,flowFP-method", "sampleNames,flowFPPlex-method", "sampleNames-methods" ] }, { "page": "show-methods", "title": "Methods to view flowFP objects", "topics": [ "show,flowFP-method", "show,flowFPModel-method", "show,flowFPPlex-method", "show-methods" ] }, { "page": "summary-methods", "title": "Summerizes a flowFP object.", "topics": [ "summary,flowFP-method", "summary-methods" ] }, { "page": "tags-methods", "title": "Returns tags from a flowFP object.", "topics": [ "tags", "tags,flowFP-method", "tags-methods" ] } ], "_rundeps": [ "BH", "Biobase", "BiocGenerics", "biocmake", "cpp11", "cytolib", "deldir", "dir.expiry", "filelock", "flowCore", "flowViz", "generics", "hexbin", "IDPmisc", "interp", "jpeg", "KernSmooth", "lattice", "latticeExtra", "MASS", "matrixStats", "png", "RColorBrewer", "Rcpp", "RcppEigen", "Rhdf5lib", "RProtoBufLib", "S4Vectors" ], "_vignettes": [ { "source": "flowFP_HowTo.Rnw", "filename": "flowFP_HowTo.pdf", "title": "Fingerprinting for Flow Cytometry", "engine": "utils::Sweave", "headings": [ "Introduction", "Algorithm Description", "Fingerprint Representation", "Fingerprinting for Gating Quality Control", "Limitations, Caveats and Comments", "Acknowledgements" ], "created": "2013-11-01 20:09:09", "modified": "2013-11-01 20:09:09", "commits": 1 } ], "_score": 4.722633922533813, "_indexed": true, "_nocasepkg": "flowfp", "_universes": [ "bioc" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.71.0", "date": "2026-07-23T08:42:42.000Z", "distro": "resolute", "arch": "aarch64", "commit": "4e1e604258ea4507bb85dfc9b496f9ce8ddf48be", "fileid": "https://r2.ropensci.org/34e02a50c87df2effbbe254eca2b6338b5ff8886d61864e02f95c071a2502ee8", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29991676080" }, { "r": "4.7.0", "os": "linux", "version": "1.71.0", "date": "2026-07-23T08:43:48.000Z", "distro": "resolute", "arch": "x86_64", "commit": "4e1e604258ea4507bb85dfc9b496f9ce8ddf48be", "fileid": "https://r2.ropensci.org/19d01aa023eda0f5f3d40e2751f7d7e70601a5c31f6cd2969fdc011ae7c669ff", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29991676080" }, { "r": "4.6.1", "os": "linux", "version": "1.71.0", "date": "2026-07-23T08:42:53.000Z", "distro": "resolute", "arch": "aarch64", "commit": "4e1e604258ea4507bb85dfc9b496f9ce8ddf48be", "fileid": "https://r2.ropensci.org/1a98232ebc5dab774d255c1c58b29d47d1c3c337206ddad834824b88821c53f7", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29991676080" }, { "r": "4.6.1", "os": "linux", "version": "1.71.0", "date": "2026-07-23T08:43:20.000Z", "distro": "resolute", "arch": "x86_64", "commit": "4e1e604258ea4507bb85dfc9b496f9ce8ddf48be", "fileid": "https://r2.ropensci.org/24b3d99a58ee4e93e8d8a4b9ad45848cb3c247984bafc2e09943bf6fa4483281", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29991676080" }, { "r": "4.5.3", "os": "mac", "version": "1.71.0", "date": "2026-07-23T08:46:04.000Z", "arch": "aarch64", "commit": "4e1e604258ea4507bb85dfc9b496f9ce8ddf48be", "fileid": "https://r2.ropensci.org/0fa330a3a96607072fb98ab840e40e7e90b8b88c5a2bd6cbc342d3407bf9df46", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29991676080" }, { "r": "4.5.3", "os": "mac", "version": "1.71.0", "date": "2026-07-23T08:47:20.000Z", "arch": "x86_64", "commit": "4e1e604258ea4507bb85dfc9b496f9ce8ddf48be", "fileid": "https://r2.ropensci.org/428296813c7dc213ad834dc67f7c2fe97fbf89fc7d27decdac32ea46aa8602a1", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29991676080" }, { "r": "4.6.1", "os": "mac", "version": "1.71.0", "date": "2026-07-23T08:46:00.000Z", "arch": "aarch64", "commit": "4e1e604258ea4507bb85dfc9b496f9ce8ddf48be", "fileid": "https://r2.ropensci.org/aebe3e25ec084bb1570429920de653bcaf097c706f950454dc21679f8eadf2a2", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29991676080" }, { "r": "4.6.1", "os": "mac", "version": "1.71.0", "date": "2026-07-23T08:48:03.000Z", "arch": "x86_64", "commit": "4e1e604258ea4507bb85dfc9b496f9ce8ddf48be", "fileid": "https://r2.ropensci.org/f2263f96ee1f44443cfc9c4f2e77e42fd0d67424a6dab3f5055982031d337850", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29991676080" }, { "r": "4.6.0", "os": "wasm", "version": "1.71.0", "date": "2026-07-23T08:42:45.000Z", "arch": "emscripten", "commit": "4e1e604258ea4507bb85dfc9b496f9ce8ddf48be", "fileid": "https://r2.ropensci.org/08105c821967c9fa05723f41a371a973796ff3454b8d4e95f7d95a81258ff239", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29991676080" }, { "r": "4.7.0", "os": "win", "version": "1.71.0", "date": "2026-07-23T08:42:10.000Z", "arch": "x86_64", "commit": "4e1e604258ea4507bb85dfc9b496f9ce8ddf48be", "fileid": "https://r2.ropensci.org/efe564d833c722eca58ed7ee9920b113dfb45ed5b7efa2d56947c6283b7365d3", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29991676080" }, { "r": "4.5.3", "os": "win", "version": "1.71.0", "date": "2026-07-23T08:42:13.000Z", "arch": "x86_64", "commit": "4e1e604258ea4507bb85dfc9b496f9ce8ddf48be", "fileid": "https://r2.ropensci.org/ba640a6a8226f4010bee5bd90cb70b57ffd672c8b9648123057b8adbe2578d7f", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29991676080" }, { "r": "4.6.1", "os": "win", "version": "1.71.0", "date": "2026-07-23T08:41:51.000Z", "arch": "x86_64", "commit": "4e1e604258ea4507bb85dfc9b496f9ce8ddf48be", "fileid": "https://r2.ropensci.org/cb9abbd4b1592376c9f9e72585dd9b0707c7dc256cf5558e5eed7e2c7c3a54ea", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/29991676080" } ] }