Package: ffpeExampleData 1.51.0

Levi Waldron

ffpeExampleData: Illumina DASL example microarray data

A subset of GSE17565 (April et al. 2009) containing 32 FFPE samples of Burkitts Lymphoma and Breast Adenocarcinoma, with a dilution series in technical duplicate.

Authors:Levi Waldron

ffpeExampleData_1.51.0.tar.gz
ffpeExampleData_1.51.0.tar.gz(r-4.7-any)ffpeExampleData_1.51.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
ffpeExampleData/json (API)

# Install 'ffpeExampleData' in R:

install.packages('ffpeExampleData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

lumibatch.GSE17565 - Illumina DASL expression data from FFPE tissues.

On BioConductor:ffpeExampleData-1.51.0(data/experiment 3.24)ffpeExampleData-1.50.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

tissue genome microarraydata tissuemicroarraydata geo datapkg

2.30 score 6 scripts 0 exports 159 dependencies

Last updated from:ee4ce2c151. Checks:1 ERROR, 3 OK. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	ERROR	194
linux-devel	OK	396
source / vignettes	OK	327
linux-release	OK	436

Exports:

Dependencies:abind affy affyio annotate AnnotationDbi askpass base64 beanplot BH Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocIO biocmake BiocManager BiocParallel Biostrings bit bit64 bitops blob bumphunter cachem cigarillo cli clipr codetools cpp11 crayon curl data.table DBI dbplyr DelayedArray DelayedMatrixStats digest dir.expiry doRNG dplyr farver fastmap FDb.InfiniumMethylation.hg19 filelock foreach formatR futile.logger futile.options genefilter generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GEOquery ggplot2 glue gtable h5mread HDF5Array hms httr httr2 illuminaio IRanges isoband iterators jsonlite KEGGREST KernSmooth labeling lambda.r lattice lifecycle limma locfit lumi magrittr MASS Matrix MatrixGenerics matrixStats mclust memoise methylumi mgcv mime minfi multtest nleqslv nlme nor1mix openssl org.Hs.eg.db pillar pkgconfig plyr png preprocessCore prettyunits progress purrr quadprog R.methodsS3 R.oo R.utils R6 RColorBrewer Rcpp RCurl readr rentrez reshape reshape2 restfulr rhdf5 rhdf5filters Rhdf5lib Rhtslib rjson rlang rngtools Rsamtools RSQLite rtracklayer rvest S4Arrays S4Vectors S7 scales scrime selectr Seqinfo siggenes snow SparseArray sparseMatrixStats statmod stringi stringr SummarizedExperiment survival sys tibble tidyr tidyselect TxDb.Hsapiens.UCSC.hg19.knownGene tzdb UCSC.utils utf8 vctrs viridisLite vroom withr XML xml2 xtable XVector yaml

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Illumina DASL example microarray data ~~ package title ~~	ffpeExampleData-package ffpeExampleData
Illumina DASL expression data from FFPE tissues.	lumibatch.GSE17565