Package: fdrame 1.77.0

Effi Kenigsberg

fdrame: FDR adjustments of Microarray Experiments (FDR-AME)

This package contains two main functions. The first is fdr.ma which takes normalized expression data array, experimental design and computes adjusted p-values It returns the fdr adjusted p-values and plots, according to the methods described in (Reiner, Yekutieli and Benjamini 2002). The second, is fdr.gui() which creates a simple graphic user interface to access fdr.ma

Authors:Yoav Benjamini, Effi Kenigsberg, Anat Reiner, Daniel Yekutieli

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# Install 'fdrame' in R:
install.packages('fdrame', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • design - Experimental design
  • exp.arr - Normalized Expression Array

On BioConductor:fdrame-1.77.0(bioc 3.20)fdrame-1.76.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

35 exports 0.91 score 0 dependencies

Last updated 2 months agofrom:9bdf7a8e26

Exports:compute.f.statisticcompute.resampling.statcompute.statisticcompute.t.statisticfdr.adaptive.cfdr.adaptive.c.resamplingfdr.basic.compfdr.bhfdr.errorfdr.guifdr.mafdr.plotfdr.ptfdr.qfdr.qugene.expression.normalizationget.resampling.statistic.arrayOnBrowseDesignOnBrowseInputOnBrowseOutputOnCancelOnCbfa1OnCbfa2OnCbfa3OnCbfa4OnComputeOnHelpOnOKOnRbfa1OnRbfa2OnRbfa3OnRbfa4OnRbpm1OnRbpm2read.matrix

Dependencies:

Annotation Overview

Rendered fromfdrame.Rnwusingutils::Sweaveon Jul 03 2024.

Last update: 2013-11-01
Started: 2013-11-01