Package: fastRanges 1.1.0

Overview | A Mental Model | Which Function Should You Use? | The Example Data | Core Overlap Operations | Return all hit pairs | Count matches per query | Ask only whether a match exists | Important Arguments | type | max_gap | min_overlap | ignore_strand | threads and deterministic | Bioconductor Compatibility | What is currently supported? | What is not currently supported? | Empty ranges | Direct vs indexed usage | deterministic | Return Types You Will See Most Often | Reusing the Same Subject with an Index | Overlap Joins | Nearest and Directional Queries | Grouped Overlap Summaries | Count overlaps by group | Aggregate a subject score over overlaps | Self-Overlaps, Clusters, and Sliding Windows | Range Algebra | Coverage and Binned Coverage | Iterating over Large Query Sets | Saving and Loading an Index | A Small Benchmark Example | Benchmark Resources | Package Example Files | Session Info