Package: fastLiquidAssociation 1.41.0
Tina Gunderson
fastLiquidAssociation: functions for genome-wide application of Liquid Association
This package extends the function of the LiquidAssociation package for genome-wide application. It integrates a screening method into the LA analysis to reduce the number of triplets to be examined for a high LA value and provides code for use in subsequent significance analyses.
Authors:
fastLiquidAssociation_1.41.0.tar.gz
fastLiquidAssociation_1.41.0.zip(r-4.5)fastLiquidAssociation_1.41.0.zip(r-4.4)fastLiquidAssociation_1.41.0.zip(r-4.3)
fastLiquidAssociation_1.41.0.tgz(r-4.4-any)fastLiquidAssociation_1.41.0.tgz(r-4.3-any)
fastLiquidAssociation_1.41.0.tar.gz(r-4.5-noble)fastLiquidAssociation_1.41.0.tar.gz(r-4.4-noble)
fastLiquidAssociation_1.41.0.tgz(r-4.4-emscripten)fastLiquidAssociation_1.41.0.tgz(r-4.3-emscripten)
fastLiquidAssociation.pdf |fastLiquidAssociation.html✨
fastLiquidAssociation/json (API)
| # Install 'fastLiquidAssociation' in R: |
| install.packages('fastLiquidAssociation', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- testmat - Example results from fastMLA requiring all significance methods
On BioConductor:fastLiquidAssociation-1.41.0(bioc 3.20)fastLiquidAssociation-1.40.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:89f54e138d
Exports:fastboots.GLAfastMLAmass.CNM
Dependencies:AnnotationDbiaskpassbackportsbase64encBiobaseBiocGenericsBiostringsbitbit64blobbroombslibcachemcheckmatecliclustercodetoolscolorspacecpp11crayoncurldata.tableDBIdigestdoParalleldplyrdynamicTreeCutevaluatefansifarverfastclusterfastmapfontawesomeforeachforeignFormulafsgeepackgenericsGenomeInfoDbGenomeInfoDbDataggplot2glueGO.dbgridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetshttrimputeIRangesisobanditeratorsjquerylibjsonliteKEGGRESTknitrlabelinglatticelifecycleLiquidAssociationmagrittrMASSMatrixmatrixStatsmemoisemgcvmimemunsellnlmennetopensslorg.Sc.sgd.dbpillarpkgconfigplogrpngpreprocessCorepurrrR6rappdirsRColorBrewerRcpprlangrmarkdownrpartRSQLiterstudioapiS4VectorssassscalesstringistringrsurvivalsystibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviridisviridisLiteWGCNAwithrxfunXVectoryamlyeastCCzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Functions to extend liquid association (LA) analysis for genome-wide use | fastLiquidAssociation-package fastLiquidAssociation |
| Function to parallelize bootstrapping for MLA robust estimates. | fastboots.GLA fastboots.GLA,ANY,matrix-method fastboots.GLA-class fastboots.GLA-methods |
| Function to more efficiently screen for gene triplets for those with a high liquid association value. | fastMLA fastMLA,matrix-method fastMLA-class fastMLA-methods |
| Function to obtain CNM significance estimates from an object result of fastMLA. | mass.CNM mass.CNM,matrix,data.frame-method mass.CNM-class mass.CNM-methods |
| Example results from fastMLA requiring all significance methods | testmat |
