{
  "_id": "6aca5ed7fe5cc25786e87faa",
  "Package": "fastLiquidAssociation",
  "Type": "Package",
  "Title": "functions for genome-wide application of Liquid Association",
  "Version": "1.49.0",
  "Date": "2017-10-14",
  "Author": "Tina Gunderson",
  "Maintainer": "Tina Gunderson <gunderson.tina@gmail.com>",
  "Description": "This package extends the function of the LiquidAssociation\npackage for genome-wide application. It integrates a screening\nmethod into the LA analysis to reduce the number of triplets to\nbe examined for a high LA value and provides code for use in\nsubsequent significance analyses.",
  "biocViews": "Software, GeneExpression, Genetics, Pathways, CellBiology",
  "License": "GPL-2",
  "LazyLoad": "yes",
  "Config/pak/sysreqs": "cmake make libicu-dev libpng-dev libuv1-dev\nlibssl-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:39:06 UTC",
  "RemoteUrl": "https://github.com/bioc/fastLiquidAssociation",
  "RemoteRef": "HEAD",
  "RemoteSha": "a5e403d15e5749f825b0b6acff64c3645362ff24",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-10 14:50:38 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "fastLiquidAssociation_1.49.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/ac628065f67fad65d3dda3cd08feccaf4ce78cea496c2dc67b5e1f7b662269e8",
  "_filesize": 878609,
  "_sha256": "ac628065f67fad65d3dda3cd08feccaf4ce78cea496c2dc67b5e1f7b662269e8",
  "_expires": "2027-01-18T15:50:45.000Z",
  "_created": "2026-10-10T14:50:38.000Z",
  "_published": "2026-10-10T15:50:47.598Z",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38060956141",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_bioccheck": {
    "error": 1,
    "warning": 3,
    "note": 13
  },
  "_upstream": "https://github.com/bioc/fastLiquidAssociation",
  "_commit": {
    "id": "a5e403d15e5749f825b0b6acff64c3645362ff24",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379946
  },
  "_maintainer": {
    "name": "Tina Gunderson",
    "email": "gunderson.tina@gmail.com",
    "login": "gundt",
    "description": "",
    "uuid": 32917804
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 114239811704,
      "time": 204,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "11672859717"
    },
    {
      "job": 114239811684,
      "time": 313,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "11673825548"
    },
    {
      "job": 114239811726,
      "time": 343,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11672992739"
    },
    {
      "job": 114239811755,
      "time": 160,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "11675211523"
    },
    {
      "job": 114239811681,
      "time": 185,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11675166672"
    },
    {
      "job": 114239008379,
      "time": 251,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11673361648"
    },
    {
      "job": 114239811739,
      "time": 152,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11673157245"
    },
    {
      "job": 114239811760,
      "time": 241,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "11673307260"
    },
    {
      "job": 114239811792,
      "time": 240,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "11673282250"
    },
    {
      "job": 114239811702,
      "time": 241,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11673426037"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "LiquidAssociation",
      "role": "Depends"
    },
    {
      "package": "parallel",
      "role": "Depends"
    },
    {
      "package": "doParallel",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Depends"
    },
    {
      "package": "Hmisc",
      "role": "Depends"
    },
    {
      "package": "utils",
      "role": "Depends"
    },
    {
      "package": "WGCNA",
      "role": "Imports"
    },
    {
      "package": "impute",
      "role": "Imports"
    },
    {
      "package": "preprocessCore",
      "role": "Imports"
    },
    {
      "package": "GOstats",
      "role": "Suggests"
    },
    {
      "package": "yeastCC",
      "role": "Suggests"
    },
    {
      "package": "org.Sc.sgd.db",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.49.0",
      "bioc": "3.24",
      "repository": "bioc"
    },
    {
      "branch": "release",
      "version": "1.48.0",
      "bioc": "3.23",
      "repository": "bioc"
    }
  ],
  "_topics": [
    "software",
    "geneexpression",
    "genetics",
    "pathways",
    "cellbiology"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 476,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 500,
    "source": "https://www.bioconductor.org/packages/stats/bioc/fastLiquidAssociation"
  },
  "_mentions": 1,
  "_searchresults": 3,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/fastLiquidAssociation.html",
    "extra/manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "fastboots.GLA",
    "fastMLA",
    "mass.CNM"
  ],
  "_datasets": [
    {
      "name": "testmat",
      "title": "Example results from fastMLA requiring all significance methods",
      "object": "testmat",
      "file": "testmat.RData",
      "class": [
        "data.frame"
      ],
      "fields": [
        "X1.or.X2",
        "X2.or.X1",
        "X3",
        "est..rho1.rho0",
        "GLA.value"
      ],
      "rows": 9,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "fastLiquidAssociation-package",
      "title": "Functions to extend liquid association (LA) analysis for genome-wide use",
      "topics": [
        "fastLiquidAssociation-package",
        "fastLiquidAssociation"
      ]
    },
    {
      "page": "fastboots.GLA-methods",
      "title": "Function to parallelize bootstrapping for MLA robust estimates.",
      "topics": [
        "fastboots.GLA",
        "fastboots.GLA,ANY,matrix-method",
        "fastboots.GLA-class",
        "fastboots.GLA-methods"
      ]
    },
    {
      "page": "fastMLA-methods",
      "title": "Function to more efficiently screen for gene triplets for those with a high liquid association value.",
      "topics": [
        "fastMLA",
        "fastMLA,matrix-method",
        "fastMLA-class",
        "fastMLA-methods"
      ]
    },
    {
      "page": "mass.CNM-methods",
      "title": "Function to obtain CNM significance estimates from an object result of fastMLA.",
      "topics": [
        "mass.CNM",
        "mass.CNM,matrix,data.frame-method",
        "mass.CNM-class",
        "mass.CNM-methods"
      ]
    },
    {
      "page": "testmat",
      "title": "Example results from fastMLA requiring all significance methods",
      "topics": [
        "testmat"
      ]
    }
  ],
  "_rundeps": [
    "AnnotationDbi",
    "askpass",
    "backports",
    "base64enc",
    "Biobase",
    "BiocBaseUtils",
    "BiocGenerics",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "broom",
    "bslib",
    "cachem",
    "checkmate",
    "cli",
    "cluster",
    "codetools",
    "colorspace",
    "cpp11",
    "crayon",
    "curl",
    "data.table",
    "DBI",
    "digest",
    "doParallel",
    "dplyr",
    "dynamicTreeCut",
    "evaluate",
    "farver",
    "fastcluster",
    "fastmap",
    "fontawesome",
    "foreach",
    "foreign",
    "Formula",
    "fs",
    "geepack",
    "generics",
    "ggplot2",
    "glue",
    "gridExtra",
    "gtable",
    "highr",
    "Hmisc",
    "htmlTable",
    "htmltools",
    "htmlwidgets",
    "httr",
    "impute",
    "IRanges",
    "isoband",
    "iterators",
    "jquerylib",
    "jsonlite",
    "KEGGREST",
    "knitr",
    "labeling",
    "lattice",
    "lifecycle",
    "LiquidAssociation",
    "magrittr",
    "MASS",
    "Matrix",
    "matrixStats",
    "memoise",
    "mime",
    "nnet",
    "openssl",
    "org.Sc.sgd.db",
    "pillar",
    "pkgconfig",
    "png",
    "preprocessCore",
    "purrr",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "rlang",
    "rmarkdown",
    "rpart",
    "RSQLite",
    "rstudioapi",
    "S4Vectors",
    "S7",
    "sass",
    "scales",
    "Seqinfo",
    "stringi",
    "stringr",
    "survival",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "tinytex",
    "utf8",
    "vctrs",
    "viridisLite",
    "WGCNA",
    "withr",
    "xfun",
    "XVector",
    "yaml",
    "yeastCC"
  ],
  "_vignettes": [
    {
      "source": "fastLiquidAssociation.Rnw",
      "filename": "fastLiquidAssociation.pdf",
      "title": "fastLiquidAssociation Vignette",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2014-04-11 20:51:57",
      "modified": "2017-10-23 04:13:49",
      "commits": 8
    }
  ],
  "_score": 3.3010299956639813,
  "_indexed": true,
  "_nocasepkg": "fastliquidassociation",
  "_universes": [
    "bioc",
    "gundt"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.49.0",
      "date": "2026-10-10T14:54:48.000Z",
      "distro": "resolute",
      "commit": "a5e403d15e5749f825b0b6acff64c3645362ff24",
      "fileid": "https://r2.ropensci.org/bb53b8f7a80ca2a480d8367c06049b22b7b7b6bc63936ecf19bae092a9851fbb",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/38060956141"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.49.0",
      "date": "2026-10-10T14:54:32.000Z",
      "distro": "resolute",
      "commit": "a5e403d15e5749f825b0b6acff64c3645362ff24",
      "fileid": "https://r2.ropensci.org/751ae17bf28291a662014076b9f279507e541e452735f16ce576afc1ee010f83",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/38060956141"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.49.0",
      "date": "2026-10-10T15:48:47.000Z",
      "commit": "a5e403d15e5749f825b0b6acff64c3645362ff24",
      "fileid": "https://r2.ropensci.org/bb651342d9adac1bbfb7c38aa83aa294d881af1516819e9f24ad9e3bcae9b9e8",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/38060956141"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.49.0",
      "date": "2026-10-10T15:48:47.000Z",
      "commit": "a5e403d15e5749f825b0b6acff64c3645362ff24",
      "fileid": "https://r2.ropensci.org/79f416e208ae7c718ae1a6b7a5512f689be97a8a50baf0e2efa8714134b4574c",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/38060956141"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.49.0",
      "date": "2026-10-10T14:53:37.000Z",
      "commit": "a5e403d15e5749f825b0b6acff64c3645362ff24",
      "fileid": "https://r2.ropensci.org/67e99b673edfcd8c766f68ae3163aab66a82a8f340ccd73ef58bf05172f33188",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/38060956141"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.49.0",
      "date": "2026-10-10T14:52:50.000Z",
      "commit": "a5e403d15e5749f825b0b6acff64c3645362ff24",
      "fileid": "https://r2.ropensci.org/37ee23f0dfa1bd08404f0226f53b84bab2a115fe9e18facce2c5bf6ef106fa18",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/38060956141"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.49.0",
      "date": "2026-10-10T14:53:00.000Z",
      "commit": "a5e403d15e5749f825b0b6acff64c3645362ff24",
      "fileid": "https://r2.ropensci.org/efa3f420e652616015493c666df7b53ba2ede6a86853c93f2f9f87b5dd3125d3",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/38060956141"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.49.0",
      "date": "2026-10-10T14:52:40.000Z",
      "commit": "a5e403d15e5749f825b0b6acff64c3645362ff24",
      "fileid": "https://r2.ropensci.org/4c0c26c89dd381a88062247f5b6dfd2e2badea39140e45d9abc7e4b73d9d685c",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/38060956141"
    }
  ]
}