Package: fCCAC 1.33.0

Pedro Madrigal

fCCAC: functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets

Computational evaluation of variability across DNA or RNA sequencing datasets is a crucial step in genomics, as it allows both to evaluate reproducibility of replicates, and to compare different datasets to identify potential correlations. fCCAC applies functional Canonical Correlation Analysis to allow the assessment of: (i) reproducibility of biological or technical replicates, analyzing their shared covariance in higher order components; and (ii) the associations between different datasets. fCCAC represents a more sophisticated approach that complements Pearson correlation of genomic coverage.

Authors:Pedro Madrigal [aut, cre]

fCCAC_1.33.0.tar.gz
fCCAC_1.33.0.zip(r-4.5)fCCAC_1.33.0.zip(r-4.4)fCCAC_1.33.0.zip(r-4.3)
fCCAC_1.33.0.tgz(r-4.4-any)fCCAC_1.33.0.tgz(r-4.3-any)
fCCAC_1.33.0.tar.gz(r-4.5-noble)fCCAC_1.33.0.tar.gz(r-4.4-noble)
fCCAC_1.33.0.tgz(r-4.4-emscripten)fCCAC_1.33.0.tgz(r-4.3-emscripten)
fCCAC.pdf |fCCAC.html
fCCAC/json (API)
NEWS

# Install 'fCCAC' in R:
install.packages('fCCAC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:fCCAC-1.33.0(bioc 3.21)fCCAC-1.32.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

epigeneticstranscriptionsequencingcoveragechipseqfunctionalgenomicsrnaseqatacseqmnaseseq

4.00 score 1 scripts 206 downloads 1 mentions 3 exports 124 dependencies

Last updated 4 months agofrom:55a4b1b159. Checks:1 OK, 6 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 31 2025
R-4.5-winNOTEJan 31 2025
R-4.5-linuxNOTEJan 31 2025
R-4.4-winNOTEJan 31 2025
R-4.4-macNOTEJan 31 2025
R-4.3-winNOTEJan 31 2025
R-4.3-macNOTEJan 31 2025

Exports:fccacheatmapfCCACmultiplot

Dependencies:abindashaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsBSgenomecirclizeclicliprclueclustercodetoolscolorspaceComplexHeatmapcpp11crayoncurldata.tableDelayedArraydeSolvedigestdoParallelfansifarverfdafdsFNNforeachformatRfutile.loggerfutile.optionsgenericsgenomationGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesGetoptLongggplot2GlobalOptionsgluegridBasegtablehdrcdehmshttrimputeIRangesisobanditeratorsjsonlitekernlabKernSmoothkslabelinglambda.rlatticelifecyclelocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmgcvmimemulticoolmunsellmvtnormnlmeopensslpcaPPpillarpkgconfigplotrixplyrpngpracmaprettyunitsprogressR6rainbowRColorBrewerRcppRCurlreadrreshape2restfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorsscalesseqPatternshapesnowSparseArraystringistringrSummarizedExperimentsystibbletidyselecttzdbUCSC.utilsutf8vctrsviridisLitevroomwithrXMLXVectoryaml

fCCAC Vignette

Rendered fromfCCAC.Rnwusingutils::Sweaveon Jan 31 2025.

Last update: 2021-09-06
Started: 2016-10-17