Package: fCCAC 1.33.0

Pedro Madrigal

fCCAC: functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets

Computational evaluation of variability across DNA or RNA sequencing datasets is a crucial step in genomics, as it allows both to evaluate reproducibility of replicates, and to compare different datasets to identify potential correlations. fCCAC applies functional Canonical Correlation Analysis to allow the assessment of: (i) reproducibility of biological or technical replicates, analyzing their shared covariance in higher order components; and (ii) the associations between different datasets. fCCAC represents a more sophisticated approach that complements Pearson correlation of genomic coverage.

Authors:Pedro Madrigal [aut, cre]

fCCAC_1.33.0.tar.gz
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fCCAC_1.33.0.tgz(r-4.4-any)fCCAC_1.33.0.tgz(r-4.3-any)
fCCAC_1.33.0.tar.gz(r-4.5-noble)fCCAC_1.33.0.tar.gz(r-4.4-noble)
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fCCAC.pdf |fCCAC.html
fCCAC/json (API)
NEWS

# Install 'fCCAC' in R:
install.packages('fCCAC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:fCCAC-1.31.0(bioc 3.20)fCCAC-1.30.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

epigeneticstranscriptionsequencingcoveragechipseqfunctionalgenomicsrnaseqatacseqmnaseseq

4.00 score 1 scripts 192 downloads 1 mentions 3 exports 124 dependencies

Last updated 23 days agofrom:55a4b1b159. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winNOTEOct 31 2024
R-4.5-linuxNOTEOct 30 2024
R-4.4-winNOTEOct 31 2024
R-4.4-macNOTEOct 31 2024
R-4.3-winNOTEOct 31 2024
R-4.3-macNOTEOct 31 2024

Exports:fccacheatmapfCCACmultiplot

Dependencies:abindashaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsBSgenomecirclizeclicliprclueclustercodetoolscolorspaceComplexHeatmapcpp11crayoncurldata.tableDelayedArraydeSolvedigestdoParallelfansifarverfdafdsFNNforeachformatRfutile.loggerfutile.optionsgenomationGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesGetoptLongggplot2GlobalOptionsgluegridBasegtablehdrcdehmshttrimputeIRangesisobanditeratorsjsonlitekernlabKernSmoothkslabelinglambda.rlatticelifecyclelocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmgcvmimemulticoolmunsellmvtnormnlmeopensslpcaPPpillarpkgconfigplotrixplyrpngpracmaprettyunitsprogressR6rainbowRColorBrewerRcppRCurlreadrreshape2restfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorsscalesseqPatternshapesnowSparseArraystringistringrSummarizedExperimentsystibbletidyselecttzdbUCSC.utilsutf8vctrsviridisLitevroomwithrXMLXVectoryamlzlibbioc

fCCAC Vignette

Rendered fromfCCAC.Rnwusingutils::Sweaveon Oct 30 2024.

Last update: 2021-09-06
Started: 2016-10-17