Package: fCCAC 1.33.0

Pedro Madrigal

fCCAC: functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets

Computational evaluation of variability across DNA or RNA sequencing datasets is a crucial step in genomics, as it allows both to evaluate reproducibility of replicates, and to compare different datasets to identify potential correlations. fCCAC applies functional Canonical Correlation Analysis to allow the assessment of: (i) reproducibility of biological or technical replicates, analyzing their shared covariance in higher order components; and (ii) the associations between different datasets. fCCAC represents a more sophisticated approach that complements Pearson correlation of genomic coverage.

Authors:Pedro Madrigal [aut, cre]

fCCAC_1.33.0.tar.gz
fCCAC_1.33.0.zip(r-4.5)fCCAC_1.33.0.zip(r-4.4)fCCAC_1.33.0.zip(r-4.3)
fCCAC_1.33.0.tgz(r-4.4-any)fCCAC_1.33.0.tgz(r-4.3-any)
fCCAC_1.33.0.tar.gz(r-4.5-noble)fCCAC_1.33.0.tar.gz(r-4.4-noble)
fCCAC_1.33.0.tgz(r-4.4-emscripten)fCCAC_1.33.0.tgz(r-4.3-emscripten)
fCCAC.pdf |fCCAC.html
fCCAC/json (API)
NEWS

# Install 'fCCAC' in R:
install.packages('fCCAC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:fCCAC-1.33.0(bioc 3.21)fCCAC-1.32.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

epigeneticstranscriptionsequencingcoveragechipseqfunctionalgenomicsrnaseqatacseqmnaseseq

4.00 score 1 scripts 192 downloads 1 mentions 3 exports 125 dependencies

Last updated 3 months agofrom:55a4b1b159. Checks:1 OK, 6 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 01 2025
R-4.5-winNOTEJan 01 2025
R-4.5-linuxNOTEJan 01 2025
R-4.4-winNOTEJan 01 2025
R-4.4-macNOTEJan 01 2025
R-4.3-winNOTEJan 01 2025
R-4.3-macNOTEJan 01 2025

Exports:fccacheatmapfCCACmultiplot

Dependencies:abindashaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsBSgenomecirclizeclicliprclueclustercodetoolscolorspaceComplexHeatmapcpp11crayoncurldata.tableDelayedArraydeSolvedigestdoParallelfansifarverfdafdsFNNforeachformatRfutile.loggerfutile.optionsgenericsgenomationGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesGetoptLongggplot2GlobalOptionsgluegridBasegtablehdrcdehmshttrimputeIRangesisobanditeratorsjsonlitekernlabKernSmoothkslabelinglambda.rlatticelifecyclelocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmgcvmimemulticoolmunsellmvtnormnlmeopensslpcaPPpillarpkgconfigplotrixplyrpngpracmaprettyunitsprogressR6rainbowRColorBrewerRcppRCurlreadrreshape2restfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorsscalesseqPatternshapesnowSparseArraystringistringrSummarizedExperimentsystibbletidyselecttzdbUCSC.utilsutf8vctrsviridisLitevroomwithrXMLXVectoryamlzlibbioc

fCCAC Vignette

Rendered fromfCCAC.Rnwusingutils::Sweaveon Jan 01 2025.

Last update: 2021-09-06
Started: 2016-10-17