Package: fCCAC 1.39.0

Pedro Madrigal

fCCAC: functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets

Computational evaluation of variability across DNA or RNA sequencing datasets is a crucial step in genomics, as it allows both to evaluate reproducibility of replicates, and to compare different datasets to identify potential correlations. fCCAC applies functional Canonical Correlation Analysis to allow the assessment of: (i) reproducibility of biological or technical replicates, analyzing their shared covariance in higher order components; and (ii) the associations between different datasets. fCCAC represents a more sophisticated approach that complements Pearson correlation of genomic coverage.

Authors:Pedro Madrigal [aut, cre]

fCCAC_1.39.0.tar.gz
fCCAC_1.39.0.zip(r-4.7)fCCAC_1.39.0.zip(r-4.6)fCCAC_1.39.0.zip(r-4.5)
fCCAC_1.39.0.tgz(r-4.6-any)fCCAC_1.39.0.tgz(r-4.5-any)
fCCAC_1.39.0.tar.gz(r-4.7-any)fCCAC_1.39.0.tar.gz(r-4.6-any)
fCCAC_1.39.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
fCCAC/json (API)
NEWS

# Install 'fCCAC' in R:
install.packages('fCCAC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pmb59/fccac/issues

On BioConductor:fCCAC-1.39.0(bioc 3.24)fCCAC-1.38.0(bioc 3.23)

epigeneticstranscriptionsequencingcoveragechipseqfunctionalgenomicsrnaseqatacseqmnaseseqbioc-devel

4.60 score 3 scripts 444 downloads 1 mentions 3 exports 123 dependencies

Last updated from:b982fa260a. Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING208
linux-devel-x86_64NOTE397
source / vignettesOK365
linux-release-x86_64NOTE425
macos-release-arm64NOTE272
macos-oldrel-arm64NOTE255
windows-develNOTE306
windows-releaseNOTE282
windows-oldrelNOTE303
wasm-releaseOK173

Exports:fccacheatmapfCCACmultiplot

Dependencies:abindashaskpassBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsBSgenomecigarillocirclizeclicliprclueclustercodetoolscolorspaceComplexHeatmapcpp11crayoncurldata.tableDelayedArraydeSolvedigestdoParallelfarverfdafdsFNNforeachformatRfutile.loggerfutile.optionsgenericsgenomationGenomicAlignmentsGenomicRangesGetoptLongggplot2GlobalOptionsgluegridBasegtablehdrcdehmshttrimputeIRangesisobanditeratorsjsonlitekernlabKernSmoothkslabelinglambda.rlatticelifecyclelocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmgcvmimemulticoolmvtnormnlmeopensslpcaPPpillarpkgconfigplotrixplyrpngpracmaprettyunitsprogressR6rainbowRColorBrewerRcppRCurlreadrreshape2restfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorsS7scalesSeqinfoseqPatternshapesnowSparseArraystringistringrSummarizedExperimentsystibbletidyselecttzdbutf8vctrsviridisLitevroomwithrXMLXVectoryaml

fCCAC Vignette

Rendered fromfCCAC.Rnwusingutils::Sweaveon May 30 2026.

Last update: 2021-09-06
Started: 2016-10-17