{
  "_id": "6aca7530fe5cc25786e89850",
  "Package": "fCCAC",
  "Version": "1.39.0",
  "Date": "2025-04-07",
  "Type": "Package",
  "Title": "functional Canonical Correlation Analysis to evaluate Covariance\nbetween nucleic acid sequencing datasets",
  "Authors@R": "c(person(given = \"Pedro\",\nfamily = \"Madrigal\",\nrole = c(\"aut\", \"cre\"),\nemail = \"pmadrigal@ebi.ac.uk\",\ncomment = c(ORCID = \"0000-0003-1959-8199\")\n)\n)",
  "Description": "Computational evaluation of variability across DNA or RNA\nsequencing datasets is a crucial step in genomics, as it allows\nboth to evaluate reproducibility of replicates, and to compare\ndifferent datasets to identify potential correlations. fCCAC\napplies functional Canonical Correlation Analysis to allow the\nassessment of: (i) reproducibility of biological or technical\nreplicates, analyzing their shared covariance in higher order\ncomponents; and (ii) the associations between different\ndatasets. fCCAC represents a more sophisticated approach that\ncomplements Pearson correlation of genomic coverage.",
  "License": "Artistic-2.0",
  "LazyLoad": "yes",
  "biocViews": "Epigenetics, Transcription, Sequencing, Coverage, ChIPSeq,\nFunctionalGenomics, RNASeq, ATACSeq, MNaseSeq",
  "URL": "https://github.com/pmb59/fCCAC",
  "BugReports": "https://github.com/pmb59/fCCAC/issues",
  "Config/pak/sysreqs": "make libbz2-dev libicu-dev liblzma-dev libpng-dev\nlibxml2-dev libssl-dev perl libx11-dev xz-utils zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:44:39 UTC",
  "RemoteUrl": "https://github.com/bioc/fCCAC",
  "RemoteRef": "HEAD",
  "RemoteSha": "b982fa260a77728082dab6119887a02692ccd9ab",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-10 15:54:00 UTC",
    "User": "root"
  },
  "Author": "Pedro Madrigal [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-1959-8199>)",
  "Maintainer": "Pedro Madrigal <pmadrigal@ebi.ac.uk>",
  "_user": "bioc",
  "_type": "src",
  "_file": "fCCAC_1.39.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/bc90964681e07c048144dddd8108c5aa633c6caed5b053988fb5273bc8cb4ffc",
  "_filesize": 3755957,
  "_sha256": "bc90964681e07c048144dddd8108c5aa633c6caed5b053988fb5273bc8cb4ffc",
  "_expires": "2027-01-18T17:26:06.000Z",
  "_created": "2026-10-10T15:54:00.000Z",
  "_published": "2026-10-10T17:26:08.399Z",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38065203826",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_bioccheck": {
    "error": 0,
    "warning": 1,
    "note": 6
  },
  "_upstream": "https://github.com/bioc/fCCAC",
  "_commit": {
    "id": "b982fa260a77728082dab6119887a02692ccd9ab",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777380279
  },
  "_maintainer": {
    "name": "Pedro Madrigal",
    "email": "pmadrigal@ebi.ac.uk",
    "login": "pmb59",
    "bluesky": "@pmadrigal.bsky.social",
    "linkedin": "in/compbiology",
    "orcid": "0000-0003-1959-8199",
    "twitter": "@compbiology",
    "description": "Project Leader for RNA Resources at EMBL-EBI",
    "uuid": 8195212
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 114252222772,
      "time": 178,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "11674623431"
    },
    {
      "job": 114252222803,
      "time": 307,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11675167742"
    },
    {
      "job": 114252222757,
      "time": 345,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11674673420"
    },
    {
      "job": 114252222773,
      "time": 230,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11677305230"
    },
    {
      "job": 114252222786,
      "time": 229,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11676698153"
    },
    {
      "job": 114251413657,
      "time": 247,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11674842497"
    },
    {
      "job": 114252222724,
      "time": 146,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11675232201"
    },
    {
      "job": 114252222800,
      "time": 248,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "11674317761"
    },
    {
      "job": 114252222787,
      "time": 248,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "11674763082"
    },
    {
      "job": 114252222813,
      "time": 225,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11674867837"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.2.0",
      "role": "Depends"
    },
    {
      "package": "S4Vectors",
      "role": "Depends"
    },
    {
      "package": "IRanges",
      "role": "Depends"
    },
    {
      "package": "GenomicRanges",
      "role": "Depends"
    },
    {
      "package": "grid",
      "role": "Depends"
    },
    {
      "package": "fda",
      "role": "Imports"
    },
    {
      "package": "RColorBrewer",
      "role": "Imports"
    },
    {
      "package": "genomation",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "ComplexHeatmap",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "RUnit",
      "role": "Suggests"
    },
    {
      "package": "BiocGenerics",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.39.0",
      "bioc": "3.24",
      "repository": "bioc"
    },
    {
      "branch": "release",
      "version": "1.38.0",
      "bioc": "3.23",
      "repository": "bioc"
    }
  ],
  "_topics": [
    "epigenetics",
    "transcription",
    "sequencing",
    "coverage",
    "chipseq",
    "functionalgenomics",
    "rnaseq",
    "atacseq",
    "mnaseseq",
    "bioc-devel"
  ],
  "_stars": 1,
  "_contributors": [
    {
      "user": "pmb59",
      "count": 52,
      "uuid": 8195212
    },
    {
      "user": "nturaga",
      "count": 14,
      "uuid": 2746443
    },
    {
      "user": "jwokaty",
      "count": 10,
      "uuid": 1744257
    },
    {
      "user": "hpages",
      "count": 2,
      "uuid": 8810451
    },
    {
      "user": "vobencha",
      "count": 2,
      "uuid": 2466173
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 476,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 566,
    "source": "https://www.bioconductor.org/packages/stats/bioc/fCCAC"
  },
  "_mentions": 1,
  "_devurl": "https://github.com/pmb59/fccac",
  "_searchresults": 1,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/fCCAC.html",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/pmb59/fccac",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "fccac",
    "heatmapfCCAC",
    "multiplot"
  ],
  "_help": [
    {
      "page": "fCCAC-package",
      "title": "functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets",
      "topics": [
        "fCCAC-package",
        "fCCAC"
      ]
    },
    {
      "page": "fccac",
      "title": "functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets",
      "topics": [
        "fccac"
      ]
    },
    {
      "page": "heatmapfCCAC",
      "title": "Heatmap of F values obtained by Canonical Correlation Analysis",
      "topics": [
        "heatmapfCCAC"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/fCCAC/raw/HEAD/README.md",
  "_rundeps": [
    "ash",
    "askpass",
    "BH",
    "BiocBaseUtils",
    "BiocGenerics",
    "BiocIO",
    "BiocParallel",
    "Biostrings",
    "bit",
    "bit64",
    "bitops",
    "BSgenome",
    "cigarillo",
    "circlize",
    "cli",
    "clipr",
    "clue",
    "cluster",
    "codetools",
    "colorspace",
    "ComplexHeatmap",
    "cpp11",
    "crayon",
    "curl",
    "data.table",
    "deSolve",
    "digest",
    "doParallel",
    "farver",
    "fda",
    "fds",
    "FNN",
    "foreach",
    "formatR",
    "futile.logger",
    "futile.options",
    "generics",
    "genomation",
    "GenomicAlignments",
    "GenomicRanges",
    "GetoptLong",
    "ggplot2",
    "GlobalOptions",
    "glue",
    "gridBase",
    "gtable",
    "hdrcde",
    "hms",
    "httr",
    "impute",
    "IRanges",
    "isoband",
    "iterators",
    "jsonlite",
    "kernlab",
    "KernSmooth",
    "ks",
    "labeling",
    "lambda.r",
    "lattice",
    "lifecycle",
    "locfit",
    "magrittr",
    "MASS",
    "Matrix",
    "matrixStats",
    "mclust",
    "mgcv",
    "mime",
    "multicool",
    "mvtnorm",
    "nlme",
    "openssl",
    "pcaPP",
    "pillar",
    "pkgconfig",
    "plotrix",
    "plyr",
    "png",
    "pracma",
    "prettyunits",
    "progress",
    "R6",
    "rainbow",
    "RColorBrewer",
    "Rcpp",
    "RCurl",
    "readr",
    "reshape2",
    "restfulr",
    "Rhtslib",
    "rjson",
    "rlang",
    "Rsamtools",
    "rtracklayer",
    "S4Vectors",
    "S7",
    "scales",
    "Seqinfo",
    "seqPattern",
    "shape",
    "snow",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyselect",
    "tzdb",
    "utf8",
    "vctrs",
    "viridisLite",
    "vroom",
    "withr",
    "XML",
    "XVector",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "fCCAC.Rnw",
      "filename": "fCCAC.pdf",
      "title": "fCCAC Vignette",
      "engine": "utils::Sweave",
      "headings": [
        "1 Introduction",
        "2 Example",
        "3 References",
        "4 Details"
      ],
      "created": "2016-10-17 09:38:00",
      "modified": "2021-09-06 20:40:22",
      "commits": 9
    }
  ],
  "_score": 4.6020599913279625,
  "_indexed": true,
  "_nocasepkg": "fccac",
  "_universes": [
    "bioc",
    "pmb59"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.39.0",
      "date": "2026-10-10T15:57:37.000Z",
      "distro": "resolute",
      "commit": "b982fa260a77728082dab6119887a02692ccd9ab",
      "fileid": "https://r2.ropensci.org/89c2afcb4b8def0782517c15c12d60c0b78d8b03a4af1706c4dec1cd7abdb25b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/38065203826"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.39.0",
      "date": "2026-10-10T15:58:30.000Z",
      "distro": "resolute",
      "commit": "b982fa260a77728082dab6119887a02692ccd9ab",
      "fileid": "https://r2.ropensci.org/f32f709790a0809253246ae0ec6ba9af5e9873ec558bc180fbdc2bb2971035b3",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/38065203826"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.39.0",
      "date": "2026-10-10T17:22:37.000Z",
      "commit": "b982fa260a77728082dab6119887a02692ccd9ab",
      "fileid": "https://r2.ropensci.org/6149837ee97fa029633701a7f31b92a3d5933e72a0db138f67f65c0d381919e6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/38065203826"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.39.0",
      "date": "2026-10-10T17:23:21.000Z",
      "commit": "b982fa260a77728082dab6119887a02692ccd9ab",
      "fileid": "https://r2.ropensci.org/0845a5f6ea61b8b7858617c1765e1508c011870587299f7ab80323456d56ccff",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/38065203826"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.39.0",
      "date": "2026-10-10T15:56:55.000Z",
      "commit": "b982fa260a77728082dab6119887a02692ccd9ab",
      "fileid": "https://r2.ropensci.org/0d32d72686242497b31334e6704f22faa738713edba58254a4f1b096e3530c49",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/38065203826"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.39.0",
      "date": "2026-10-10T15:55:55.000Z",
      "commit": "b982fa260a77728082dab6119887a02692ccd9ab",
      "fileid": "https://r2.ropensci.org/d702f4d9f17f57fbea974ca89d9eee21a83a92517fb2e7c5cd9af18f7c99e6e7",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/38065203826"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.39.0",
      "date": "2026-10-10T15:55:55.000Z",
      "commit": "b982fa260a77728082dab6119887a02692ccd9ab",
      "fileid": "https://r2.ropensci.org/163ba8569de201c294f2777a9534c99e11b05cd3b37aea634844036f7e3db2a0",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/38065203826"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.39.0",
      "date": "2026-10-10T15:56:33.000Z",
      "commit": "b982fa260a77728082dab6119887a02692ccd9ab",
      "fileid": "https://r2.ropensci.org/b4a2c7998a93d6920f66b4b3888ce581c3db75e4d7e7d26393e7e8a10456a080",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/38065203826"
    }
  ]
}