Package: evaluomeR 1.23.0

José Antonio Bernabé-Díaz

evaluomeR: Evaluation of Bioinformatics Metrics

Evaluating the reliability of your own metrics and the measurements done on your own datasets by analysing the stability and goodness of the classifications of such metrics.

Authors:José Antonio Bernabé-Díaz [aut, cre], Manuel Franco [aut], Juana-María Vivo [aut], Manuel Quesada-Martínez [aut], Astrid Duque-Ramos [aut], Jesualdo Tomás Fernández-Breis [aut]

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evaluomeR.pdf |evaluomeR.html✨
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NEWS

# Install 'evaluomeR' in R:
install.packages('evaluomeR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/neobernad/evaluomer/issues

Datasets:

On BioConductor:evaluomeR-1.23.0(bioc 3.21)evaluomeR-1.22.0(bioc 3.20)

clusteringclassificationfeatureextractionassessmentclustering-evaluationevaluomeevaluomermetrics

4.82 score 33 scripts 199 downloads 22 exports 114 dependencies

Last updated 2 months agofrom:b2ae8f523f. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 29 2024
R-4.5-winWARNINGNov 29 2024
R-4.5-linuxWARNINGNov 29 2024
R-4.4-winWARNINGNov 29 2024
R-4.4-macWARNINGNov 29 2024
R-4.3-winWARNINGNov 29 2024
R-4.3-macWARNINGNov 29 2024

Exports:annotateClustersByMetricclusterbootWrapperevaluomeRSupportedCBIgetDataQualityRangegetMetricRangeByClustergetMetricsRelevancygetOptimalKValueglobalMetricmetricsCorrelationsplotMetricsBoxplotplotMetricsClusterplotMetricsClusterComparisonplotMetricsMinMaxplotMetricsViolinqualityqualityRangequalitySetstabilitystabilityRangestabilitySetstandardizeQualityDatastandardizeStabilityData

Dependencies:abindaskpassbase64encBiobaseBiocBaseUtilsBiocGenericsbslibcachemclasscliclustercolorspacecorrplotcpp11crayoncurlDelayedArraydendextendDEoptimRdigestdiptestdplyrevaluatefansifarverfastmapflexclustflexmixfontawesomefpcfsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggdendroggplot2gluegridExtragtablehighrhtmltoolshttrIRangesisobandjquerylibjsonlitekableExtrakernlabknitrlabelinglatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisemgcvmimemodeltoolsMultiAssayExperimentmunsellnlmennetopensslpillarpkgconfigplotrixplyrprabcluspurrrR6randomForestrappdirsrbibutilsRColorBrewerRcppRdpackreshape2rlangrmarkdownrobustbaseRSKCrstudioapiS4ArraysS4VectorssassscalessparclSparseArraystringistringrSummarizedExperimentsvglitesyssystemfontstibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviridisviridisLitewithrxfunxml2XVectoryamlzlibbioc

Evaluation of Bioinformatics Metrics with evaluomeR

José Antonio Bernabé-Díaz, Manuel Franco, Juana-María Vivo, Manuel Quesada-Martínez, Astrid Duque-Ramos, Jesualdo Tomás Fernández-Breis

Rendered frommanual.Rmdusingknitr::rmarkdownon Nov 29 2024.

Last update: 2024-06-17
Started: 2019-02-11