Package: evaluomeR 1.23.0

José Antonio Bernabé-Díaz

evaluomeR: Evaluation of Bioinformatics Metrics

Evaluating the reliability of your own metrics and the measurements done on your own datasets by analysing the stability and goodness of the classifications of such metrics.

Authors:José Antonio Bernabé-Díaz [aut, cre], Manuel Franco [aut], Juana-María Vivo [aut], Manuel Quesada-Martínez [aut], Astrid Duque-Ramos [aut], Jesualdo Tomás Fernández-Breis [aut]

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NEWS

# Install 'evaluomeR' in R:
install.packages('evaluomeR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/neobernad/evaluomer/issues

Datasets:

On BioConductor:evaluomeR-1.23.0(bioc 3.21)evaluomeR-1.22.0(bioc 3.20)

clusteringclassificationfeatureextractionassessmentclustering-evaluationevaluomeevaluomermetrics

4.82 score 33 scripts 199 downloads 22 exports 113 dependencies

Last updated 3 months agofrom:b2ae8f523f. Checks:1 OK, 6 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKDec 29 2024
R-4.5-winWARNINGDec 31 2024
R-4.5-linuxWARNINGDec 29 2024
R-4.4-winWARNINGDec 31 2024
R-4.4-macWARNINGDec 29 2024
R-4.3-winWARNINGDec 31 2024
R-4.3-macWARNINGDec 29 2024

Exports:annotateClustersByMetricclusterbootWrapperevaluomeRSupportedCBIgetDataQualityRangegetMetricRangeByClustergetMetricsRelevancygetOptimalKValueglobalMetricmetricsCorrelationsplotMetricsBoxplotplotMetricsClusterplotMetricsClusterComparisonplotMetricsMinMaxplotMetricsViolinqualityqualityRangequalitySetstabilitystabilityRangestabilitySetstandardizeQualityDatastandardizeStabilityData

Dependencies:abindaskpassbase64encBiobaseBiocBaseUtilsBiocGenericsbslibcachemclasscliclustercolorspacecorrplotcpp11crayoncurlDelayedArraydendextendDEoptimRdigestdiptestdplyrevaluatefansifarverfastmapflexclustflexmixfontawesomefpcfsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggdendroggplot2gluegridExtragtablehighrhtmltoolshttrIRangesisobandjquerylibjsonlitekableExtrakernlabknitrlabelinglatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisemgcvmimemodeltoolsMultiAssayExperimentmunsellnlmennetopensslpillarpkgconfigplotrixplyrprabcluspurrrR6randomForestrappdirsrbibutilsRColorBrewerRcppRdpackreshape2rlangrmarkdownrobustbaseRSKCrstudioapiS4ArraysS4VectorssassscalessparclSparseArraystringistringrSummarizedExperimentsvglitesyssystemfontstibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviridisviridisLitewithrxfunxml2XVectoryaml

Evaluation of Bioinformatics Metrics with evaluomeR

José Antonio Bernabé-Díaz, Manuel Franco, Juana-María Vivo, Manuel Quesada-Martínez, Astrid Duque-Ramos, Jesualdo Tomás Fernández-Breis

Rendered frommanual.Rmdusingknitr::rmarkdownon Dec 29 2024.

Last update: 2024-06-17
Started: 2019-02-11