Package: evaluomeR 1.23.0
José Antonio Bernabé-Díaz
evaluomeR: Evaluation of Bioinformatics Metrics
Evaluating the reliability of your own metrics and the measurements done on your own datasets by analysing the stability and goodness of the classifications of such metrics.
Authors:
evaluomeR_1.23.0.tar.gz
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evaluomeR.pdf |evaluomeR.html✨
evaluomeR/json (API)
NEWS
# Install 'evaluomeR' in R: |
install.packages('evaluomeR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/neobernad/evaluomer/issues
- bioMetrics - Dataset: Metrics for biological pathways
- ontMetrics - Dataset: Structural ontology metrics
- rnaMetrics - Dataset: RNA quality metrics
On BioConductor:evaluomeR-1.21.6(bioc 3.20)evaluomeR-1.20.5(bioc 3.19)
clusteringclassificationfeatureextractionassessmentclustering-evaluationevaluomeevaluomermetrics
Last updated 23 days agofrom:b2ae8f523f. Checks:OK: 1 WARNING: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 30 2024 |
R-4.5-win | WARNING | Oct 30 2024 |
R-4.5-linux | WARNING | Oct 30 2024 |
R-4.4-win | WARNING | Oct 30 2024 |
R-4.4-mac | WARNING | Oct 31 2024 |
R-4.3-win | WARNING | Oct 31 2024 |
R-4.3-mac | WARNING | Oct 31 2024 |
Exports:annotateClustersByMetricclusterbootWrapperevaluomeRSupportedCBIgetDataQualityRangegetMetricRangeByClustergetMetricsRelevancygetOptimalKValueglobalMetricmetricsCorrelationsplotMetricsBoxplotplotMetricsClusterplotMetricsClusterComparisonplotMetricsMinMaxplotMetricsViolinqualityqualityRangequalitySetstabilitystabilityRangestabilitySetstandardizeQualityDatastandardizeStabilityData
Dependencies:abindaskpassbase64encBiobaseBiocBaseUtilsBiocGenericsbslibcachemclasscliclustercolorspacecorrplotcpp11crayoncurlDelayedArraydendextendDEoptimRdigestdiptestdplyrevaluatefansifarverfastmapflexclustflexmixfontawesomefpcfsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggdendroggplot2gluegridExtragtablehighrhtmltoolshttrIRangesisobandjquerylibjsonlitekableExtrakernlabknitrlabelinglatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisemgcvmimemodeltoolsMultiAssayExperimentmunsellnlmennetopensslpillarpkgconfigplotrixplyrprabcluspurrrR6randomForestrappdirsrbibutilsRColorBrewerRcppRdpackreshape2rlangrmarkdownrobustbaseRSKCrstudioapiS4ArraysS4VectorssassscalessparclSparseArraystringistringrSummarizedExperimentsvglitesyssystemfontstibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviridisviridisLitewithrxfunxml2XVectoryamlzlibbioc