NEWS

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evaluomeR 1.7.8 (2022-10-12)

• All metrics within dataframe can be clustered altogether in evaluomeR, instead of clustering per metric.

evaluomeR 1.7.6-7 (2021-03-01)

• Bug fix: Infinite boot removed from kmeansruns in FPC pacakge.

evaluomeR 1.7.5 (2021-03-01)

• Minor bug fix for Mac compilation.

evaluomeR 1.7.4 (2020-06-01)

• Added 'scale' parameter to plotMetricsCluster method.

evaluomeR 1.7.3 (2020-04-16)

• Clusterboot interfaces can be set through 'cbi' parameter to quality methods. It takes one the following values: "kmeans", "clara", "clara_pam", "hclust", "pamk", "pamk_pam".

evaluomeR 1.7.2 (2020-04-14)

• Stability analysis and quality analysis will not stuck in bootstrap.

evaluomeR 1.7.1 (2020-04-13)

• Clusterboot interfaces can be set through 'cbi' parameter to stability methods. It takes one the following values: "kmeans", "clara", "clara_pam", "hclust", "pamk", "pamk_pam".

evaluomeR 1.3.41 (2019-01-07)

• Minor bug fix for R 4.0 devel.

evaluomeR 1.3.4 (2019-12-19)

• Adding 'plotMetricsClusterComparison' method.

evaluomeR 1.3.3 (2019-12-16)

• Refactoring 'getOptimalKValue' method
• Adding stabilitySet and qualitySet

evaluomeR 1.3.2 (2019-11-12)

• Added new methods: Dependency with FPC added. Stability/stabilityRange also outputs cluster information like centers.

evaluomeR 1.3.0 (2019-11-12)

• Added new methods: plotMetricsMinMax, plotMetricsBoxplot, plotMetricsCluster, plotMetricsCluster and plotMetricsViolin

evaluomeR 1.1.6 (2019-09-25)

• Bug fixes

evaluomeR 1.1.5 (2019-09-25)

• Bug fixes

evaluomeR 1.1.4 (2019-09-24)

• Updating package depencencies

evaluomeR 1.1.3 (2019-09-19)

• Updating data from Bioconductor devel branch

evaluomeR 1.1.2 (2019-09-11)

• Bug fix. Plot did not work as intended when there was a metric without data

evaluomeR 0.99.81 (2019-02-26)

• Updated DESCRIPTION metadata

evaluomeR 0.99.8 (2019-02-19)

• Removed dependency with orphaned 'fpc' CRAN package

evaluomeR 0.99.7 (2019-02-19)

• The method 'correlations' is now 'metricsCorrelations'

evaluomeR 0.99.6 (2019-02-19)

• Internal improvements according to Bioconductor reviews

evaluomeR 0.99.5 (2019-02-19)

• Removing some @examples so that they do not exceed the time limit of Bioconductor check

evaluomeR 0.99.4 (2019-02-16)

• The 'correlations' method also uses 'SummarizedExperiment' as output object.

evaluomeR 0.99.3 (2019-02-16)

• All methods depend on 'SummarizedExperiment' as input/output object.

evaluomeR 0.99.2 (2019-02-15)

• SummarizedExperiment can be now processed via 'seToDataFrame' method. Adding SummarizedExperiment and airway dependencies.

evaluomeR 0.99.1 (2019-02-11)

• Submitted to Bioconductor