Package: enrichplot 1.99.8

Guangchuang Yu

enrichplot: Visualization of Functional Enrichment Result

The 'enrichplot' package provides visualization methods for interpreting functional enrichment results from ORA or GSEA analyses. It is designed to work with the 'clusterProfiler' ecosystem and builds on 'ggplot2' for flexible and extensible graphics.

Authors:Guangchuang Yu [aut, cre]

enrichplot_1.99.8.tar.gz
enrichplot_1.99.8.zip(r-4.7-any)enrichplot_1.99.8.zip(r-4.6-any)enrichplot_1.99.8.zip(r-4.5-any)
enrichplot_1.99.8.tgz(r-4.6-any)enrichplot_1.99.8.tgz(r-4.5-any)
enrichplot_1.99.8.tar.gz(r-4.7-any)enrichplot_1.99.8.tar.gz(r-4.6-any)
enrichplot_1.99.8.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
enrichplot/json (API)

# Install 'enrichplot' in R:

install.packages('enrichplot', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/guangchuangyu/enrichplot/issues

On BioConductor:enrichplot-1.99.7(bioc 3.24)enrichplot-1.32.1(bioc 3.23)

annotation genesetenrichment go kegg pathways software visualization enrichment-analysis pathway-analysis

16.79 score 259 stars 74 packages 7.4k scripts 67k downloads 249 mentions 46 exports 113 dependencies

Last updated from:fe1cbf4ce1. Checks:1 ERROR, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	220
linux-devel	OK	398
source / vignettes	OK	281
linux-release	OK	402
macos-release	OK	335
macos-oldrel	OK	314
windows-devel	OK	307
windows-release	OK	246
windows-oldrel	OK	312
wasm-release	OK	203

Exports:as_enrichResult as_gseaResult autofacet cnetplot color_palette consensusmap dotplot dotplot2 emapplot emapplot_edge_density facet_grid fortify_mnsea_contribution fortify_mnsea_subnetwork geneID geneInCategory geom_cnet_label geom_gsea_gene get_enrichplot_color ggtable ggtitle goplot gseadist gseaplot gseaplot2 gsearank gseaScores heatplot hplot import_enrichr import_fgsea import_gprofiler2 import_webgestalt manhattanplot mechanismflow pairwise_termsim phaseplot plot_list pmcplot rewireplot ridgeplot set_enrichplot_color ssplot theme_dose treeplot upsetplot volplot

Dependencies:AnnotationDbi ape aplot askpass base64enc Biobase BiocBaseUtils BiocGenerics Biostrings bit bit64 blob bslib cachem cli cluster cpp11 crayon curl DBI digest DOSE dplyr enrichit evaluate farver fastmap fontawesome fontBitstreamVera fontLiberation fontquiver fs gdtools generics ggforce ggfun ggiraph ggnewscale ggplot2 ggplotify ggrepel ggtangle ggtree glue GO.db GOSemSim gridGraphics gson gtable highr htmltools htmlwidgets httr igraph IRanges isoband jquerylib jsonlite KEGGREST knitr labeling lattice lazyeval lifecycle magrittr MASS Matrix memoise mime nlme openssl patchwork pillar pkgconfig plyr png polyclip purrr R6 rappdirs RColorBrewer Rcpp RcppEigen reshape2 rlang rmarkdown RSQLite S4Vectors S7 sass scales scatterpie Seqinfo stringi stringr sys systemfonts tibble tidydr tidyr tidyselect tidytree tinytex treeio tweenr utf8 vctrs viridisLite withr xfun XVector yaml yulab.utils

Visualization of Functional Enrichment Result

Rendered fromenrichplot.Rmdusingknitr::rmarkdown

Last update: 2026-08-27
Started: 2017-11-27

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Convert compareClusterResult to data frame	as.data.frame.compareClusterResult
Plotting utility functions for enrichplot package	autofacet
barplot	barplot.enrichResult
Create color palette for continuous data	color_palette
consensusmap	consensusmap consensusmap,list-method consensusmap,mnseaResult-method consensusmap,nseaResult-method
dotplot	dotplot dotplot,compareClusterResult,ANY-method dotplot,compareClusterResult-method dotplot,enrichResult-method dotplot,enrichResultList,ANY-method dotplot,enrichResultList-method dotplot,gseaResult-method dotplot,gseaResultList,ANY-method dotplot,gseaResultList-method dotplot,mnseaResult-method dotplot.compareClusterResult dotplot.enrichResult
dotplot2	dotplot2
emapplot	emapplot emapplot,compareClusterResult-method emapplot,enrichResult-method emapplot,gseaResult-method emapplot,mnseaResult-method prepare_emapplot_data
Diagnose enrichment-map edge density	emapplot_edge_density
Predefined color palettes	enrichplot_point_shape
Plot-facing helpers for 'mnseaResult'	fortify_mnsea_contribution fortify_mnsea_subnetwork
fortify	fortify.compareClusterResult fortify.enrichResult fortify.mnseaResult fortify.nseaResult
geom_gsea_gene	geom_gsea_gene
Color utility functions for enrichplot package	get_enrichplot_color
ggtable	ggtable
goplot	goplot goplot,enrichResult-method goplot,gseaResult-method
gseadist	gseadist
gseaplot	gseaplot gseaplot,gseaResult-method gseaplot,mnseaResult-method gseaplot.gseaResult
gseaplot2	gseaplot2
gsearank	gsearank
gsInfo	gsInfo
heatplot	heatplot heatplot,enrichResult-method heatplot,gseaResult-method heatplot,mnseaResult-method prepare_heatplot_data
hplot	hplot
import_enrichr	import_enrichr
import_fgsea	import_fgsea
import_gprofiler2	import_gprofiler2
import_webgestalt	import_webgestalt
manhattanplot	manhattanplot manhattanplot,compareClusterResult,ANY-method manhattanplot,compareClusterResult-method manhattanplot,enrichResult-method manhattanplot,enrichResultList,ANY-method manhattanplot,enrichResultList-method manhattanplot,gseaResult-method manhattanplot,gseaResultList,ANY-method manhattanplot,gseaResultList-method manhattanplot,list,ANY-method manhattanplot,list-method
mechanismflow	mechanismflow mechanismflow,list-method mechanismflow,mnseaResult-method mechanismflow,nseaResult-method
pairwise_termsim	pairwise_termsim pairwise_termsim,compareClusterResult-method pairwise_termsim,enrichResult-method pairwise_termsim,gseaResult-method pairwise_termsim,mnseaResult-method pairwise_termsim.compareClusterResult pairwise_termsim.enrichResult prepare_pairwise_termsim_data
phaseplot	phaseplot phaseplot,mnseaResult-method phaseplot,nseaResult-method
Internal plot function for plotting compareClusterResult	plotting.clusterProfile
pmcplot	pmcplot
Category-Gene-Network Plot	cnetplot.compareClusterResult cnetplot.enrichResult cnetplot.gseaResult cnetplot.mnseaResult prepare_cnetplot_data prepare_mnsea_cnetplot_data
rewireplot	rewireplot rewireplot,mnseaResult-method rewireplot,nseaResult-method
ridgeplot	ridgeplot ridgeplot,gseaResult-method ridgeplot,mnseaResult-method ridgeplot.gseaResult
Helper function to set color scale for enrichplot	set_enrichplot_color
ssplot	ssplot ssplot,compareClusterResult-method ssplot,enrichResult-method ssplot,gseaResult-method ssplot,mnseaResult-method ssplot.compareClusterResult ssplot.enrichResult
treeplot	treeplot treeplot,compareClusterResult-method treeplot,enrichResult-method treeplot,gseaResult-method treeplot_internal
upsetplot method	upsetplot upsetplot,enrichResult,ANY-method upsetplot,enrichResult-method upsetplot,gseaResult upsetplot,gseaResult-method upsetplot,mnseaResult upsetplot,mnseaResult-method
volplot	volplot volplot,enrichResult-method volplot.enrichResult