Package: enrichplot 1.33.0

Guangchuang Yu

enrichplot: Visualization of Functional Enrichment Result

The 'enrichplot' package provides visualization methods for interpreting functional enrichment results from ORA or GSEA analyses. It is designed to work with the 'clusterProfiler' ecosystem and builds on 'ggplot2' for flexible and extensible graphics.

Authors:Guangchuang Yu [aut, cre], Chun-Hui Gao [ctb]

enrichplot_1.33.0.tar.gz
enrichplot_1.33.0.zip(r-4.7)enrichplot_1.33.0.zip(r-4.6)enrichplot_1.33.0.zip(r-4.5)
enrichplot_1.33.0.tgz(r-4.6-any)enrichplot_1.33.0.tgz(r-4.5-any)
enrichplot_1.33.0.tar.gz(r-4.7-any)enrichplot_1.33.0.tar.gz(r-4.6-any)
enrichplot_1.33.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
enrichplot/json (API)

# Install 'enrichplot' in R:

install.packages('enrichplot', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/guangchuangyu/enrichplot/issues

On BioConductor:enrichplot-1.33.0(bioc 3.24)enrichplot-1.32.0(bioc 3.23)

annotation genesetenrichment go kegg pathways software visualization enrichment-analysis pathway-analysis quarto

16.46 score 258 stars 56 packages 7.1k scripts 44k downloads 249 mentions 33 exports 110 dependencies

Last updated from:8adce9ad89. Checks:8 ERROR, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	247
linux-devel-x86_64	ERROR	432
source / vignettes	OK	242
linux-release-x86_64	ERROR	324
macos-release-arm64	ERROR	227
macos-oldrel-arm64	ERROR	168
windows-devel	ERROR	231
windows-release	ERROR	223
windows-oldrel	ERROR	201
wasm-release	OK	187

Exports:autofacet cnetplot color_palette dotplot dotplot2 emapplot facet_grid geneID geneInCategory geom_cnet_label geom_gsea_gene get_enrichplot_color ggtable ggtitle goplot gseadist gseaplot gseaplot2 gsearank gseaScores heatplot hplot manhattanplot pairwise_termsim plot_list pmcplot ridgeplot set_enrichplot_color ssplot theme_dose treeplot upsetplot volplot

Dependencies:AnnotationDbi ape aplot askpass base64enc Biobase BiocGenerics Biostrings bit bit64 blob bslib cachem cli cluster cpp11 crayon curl DBI digest DOSE dplyr enrichit evaluate farver fastmap fontawesome fontBitstreamVera fontLiberation fontquiver fs gdtools generics ggforce ggfun ggiraph ggnewscale ggplot2 ggplotify ggrepel ggtangle ggtree glue GO.db GOSemSim gridGraphics gtable highr htmltools htmlwidgets httr igraph IRanges isoband jquerylib jsonlite KEGGREST knitr labeling lattice lazyeval lifecycle magrittr MASS Matrix memoise mime nlme openssl patchwork pillar pkgconfig plyr png polyclip purrr R6 rappdirs RColorBrewer Rcpp reshape2 rlang rmarkdown RSQLite S4Vectors S7 sass scales scatterpie Seqinfo stringi stringr sys systemfonts tibble tidydr tidyr tidyselect tidytree tinytex treeio tweenr utf8 vctrs viridisLite withr xfun XVector yaml yulab.utils

enrichplot

Rendered fromenrichplot.qmdusingquarto::html

Last update: 2025-11-11
Started: 2025-11-11

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Convert compareClusterResult to data frame	as.data.frame.compareClusterResult
Plotting utility functions for enrichplot package	autofacet
barplot	barplot.enrichResult
Category-Gene-Network Plot	cnetplot.compareClusterResult cnetplot.enrichResult cnetplot.gseaResult
Create color palette for continuous data	color_palette
dotplot	dotplot dotplot,compareClusterResult,ANY-method dotplot,compareClusterResult-method dotplot,enrichResult-method dotplot,enrichResultList,ANY-method dotplot,enrichResultList-method dotplot,gseaResult-method dotplot,gseaResultList,ANY-method dotplot,gseaResultList-method dotplot.compareClusterResult dotplot.enrichResult
dotplot2	dotplot2
emapplot	emapplot emapplot,compareClusterResult-method emapplot,enrichResult-method emapplot,gseaResult-method emapplot_internal
Predefined color palettes	enrichplot_point_shape
fortify	fortify.compareClusterResult fortify.enrichResult
geom_gsea_gene	geom_gsea_gene
Color utility functions for enrichplot package	get_enrichplot_color
ggtable	ggtable
goplot	goplot goplot,enrichResult-method goplot,gseaResult-method
gseadist	gseadist
gseaplot	gseaplot gseaplot,gseaResult-method gseaplot.gseaResult
gseaplot2	gseaplot2
gsearank	gsearank
gsInfo	gsInfo
heatplot	heatplot heatplot,enrichResult-method heatplot,gseaResult-method heatplot.enrichResult
hplot	hplot
manhattanplot	manhattanplot manhattanplot,compareClusterResult,ANY-method manhattanplot,compareClusterResult-method manhattanplot,enrichResult-method manhattanplot,enrichResultList,ANY-method manhattanplot,enrichResultList-method manhattanplot,gseaResult-method manhattanplot,gseaResultList,ANY-method manhattanplot,gseaResultList-method manhattanplot,list,ANY-method manhattanplot,list-method
pairwise_termsim	pairwise_termsim pairwise_termsim,compareClusterResult-method pairwise_termsim,enrichResult-method pairwise_termsim,gseaResult-method pairwise_termsim.compareClusterResult pairwise_termsim.enrichResult
Internal plot function for plotting compareClusterResult	plotting.clusterProfile
pmcplot	pmcplot
ridgeplot	ridgeplot ridgeplot,gseaResult-method ridgeplot.gseaResult
Helper function to set color scale for enrichplot	set_enrichplot_color
ssplot	ssplot ssplot,compareClusterResult-method ssplot,enrichResult-method ssplot,gseaResult-method ssplot.compareClusterResult ssplot.enrichResult
treeplot	treeplot treeplot,compareClusterResult-method treeplot,enrichResult-method treeplot,gseaResult-method treeplot_internal
upsetplot method	upsetplot upsetplot,enrichResult,ANY-method upsetplot,enrichResult-method upsetplot,gseaResult upsetplot,gseaResult-method
volplot	volplot volplot,enrichResult-method volplot.enrichResult