{
  "_id": "6ae73f07818c9e3ef6dbbc1d",
  "Package": "enrichplot",
  "Title": "Visualization of Functional Enrichment Result",
  "Version": "1.99.8",
  "Authors@R": "c(\nperson(given = \"Guangchuang\", family = \"Yu\", email = \"guangchuangyu@gmail.com\",   role  = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6485-8781\"))\n)",
  "Description": "The 'enrichplot' package provides visualization methods\nfor interpreting functional enrichment results from ORA or GSEA\nanalyses. It is designed to work with the 'clusterProfiler'\necosystem and builds on 'ggplot2' for flexible and extensible\ngraphics.",
  "VignetteBuilder": "knitr",
  "License": "Artistic-2.0",
  "URL": "https://yulab-smu.top/contribution-knowledge-mining/",
  "BugReports": "https://github.com/GuangchuangYu/enrichplot/issues",
  "biocViews": "Annotation, GeneSetEnrichment, GO, KEGG, Pathways, Software,\nVisualization",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "Config/roxygen2/version": "8.1.0",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "libcairo2-dev cmake libfontconfig1-dev\nlibfreetype6-dev libglpk-dev make libicu-dev libpng-dev\nlibuv1-dev libxml2-dev libssl-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-10-09 12:00:12 UTC",
  "RemoteUrl": "https://github.com/bioc/enrichplot",
  "RemoteRef": "HEAD",
  "RemoteSha": "fe1cbf4ce17299cbb0dd516a4534148f0861319c",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-11-01 12:53:57 UTC",
    "User": "root"
  },
  "Author": "Guangchuang Yu [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-6485-8781>)",
  "Maintainer": "Guangchuang Yu <guangchuangyu@gmail.com>",
  "_user": "bioc",
  "_type": "src",
  "_file": "enrichplot_1.99.8.tar.gz",
  "_fileid": "https://r2.ropensci.org/910bbf0417572771d28f983d4515621d9ff743974f5b2a1cf274a303edbb78ec",
  "_filesize": 353872,
  "_sha256": "910bbf0417572771d28f983d4515621d9ff743974f5b2a1cf274a303edbb78ec",
  "_expires": "2027-02-09T13:30:45.000Z",
  "_created": "2026-11-01T12:53:57.000Z",
  "_published": "2026-11-01T13:30:47.478Z",
  "_upstream": "https://github.com/bioc/enrichplot",
  "_status": "success",
  "_maintainer": {
    "name": "Guangchuang Yu",
    "email": "guangchuangyu@gmail.com",
    "login": "guangchuangyu",
    "twitter": "@guangchuangyu",
    "description": "Professor of Bioinformatics at Southern Medical University.",
    "uuid": 626539,
    "orcid": "0000-0002-6485-8781"
  },
  "_jobs": [
    {
      "job": 124854382209,
      "time": 183,
      "config": "bioc-checks",
      "r": "4.6.2",
      "check": "ERROR",
      "artifact": "13085090194"
    },
    {
      "job": 124854382255,
      "time": 459,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "13084941337"
    },
    {
      "job": 124854382280,
      "time": 411,
      "config": "linux-release-x86_64",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13084417569"
    },
    {
      "job": 124854382269,
      "time": 376,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "13085087396"
    },
    {
      "job": 124854382275,
      "time": 326,
      "config": "macos-release-arm64",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13084543272"
    },
    {
      "job": 124853145335,
      "time": 325,
      "config": "source",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13084157000"
    },
    {
      "job": 124854382302,
      "time": 180,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "13084890735"
    },
    {
      "job": 124854382239,
      "time": 307,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "13084846208"
    },
    {
      "job": 124854382292,
      "time": 304,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "13084646732"
    },
    {
      "job": 124854382264,
      "time": 289,
      "config": "windows-release-x86_64",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13084980785"
    }
  ],
  "_bioccheck": {
    "error": 1,
    "warning": 2,
    "note": 12
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/41308268313",
  "_commit": {
    "id": "fe1cbf4ce17299cbb0dd516a4534148f0861319c",
    "author": "Guangchuang Yu <guangchuangyu@gmail.com>",
    "committer": "Guangchuang Yu <guangchuangyu@gmail.com>",
    "message": "update emapplot and ssplot\n",
    "time": 1791547212
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.2.0",
      "role": "Depends"
    },
    {
      "package": "aplot",
      "version": ">= 0.2.1",
      "role": "Imports"
    },
    {
      "package": "DOSE",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "enrichit",
      "version": ">= 0.1.6",
      "role": "Imports"
    },
    {
      "package": "ggfun",
      "version": ">= 0.1.7",
      "role": "Imports"
    },
    {
      "package": "ggnewscale",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "version": ">= 3.5.0",
      "role": "Imports"
    },
    {
      "package": "ggrepel",
      "version": ">= 0.9.0",
      "role": "Imports"
    },
    {
      "package": "ggtangle",
      "version": ">= 0.0.9",
      "role": "Imports"
    },
    {
      "package": "ggtree",
      "role": "Imports"
    },
    {
      "package": "GOSemSim",
      "version": ">= 2.37.2",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "grid",
      "role": "Imports"
    },
    {
      "package": "igraph",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "RColorBrewer",
      "role": "Imports"
    },
    {
      "package": "reshape2",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "scatterpie",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "tidydr",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "yulab.utils",
      "version": ">= 0.2.2",
      "role": "Imports"
    },
    {
      "package": "AnnotationDbi",
      "role": "Suggests"
    },
    {
      "package": "clusterProfiler",
      "role": "Suggests"
    },
    {
      "package": "cowplot",
      "role": "Suggests"
    },
    {
      "package": "enrichR",
      "role": "Suggests"
    },
    {
      "package": "europepmc",
      "role": "Suggests"
    },
    {
      "package": "fgsea",
      "role": "Suggests"
    },
    {
      "package": "ggarchery",
      "role": "Suggests"
    },
    {
      "package": "ggforce",
      "role": "Suggests"
    },
    {
      "package": "ggplotify",
      "role": "Suggests"
    },
    {
      "package": "ggridges",
      "role": "Suggests"
    },
    {
      "package": "ggstar",
      "role": "Suggests"
    },
    {
      "package": "ggtreeExtra",
      "role": "Suggests"
    },
    {
      "package": "ggupset",
      "role": "Suggests"
    },
    {
      "package": "glue",
      "role": "Suggests"
    },
    {
      "package": "gprofiler2",
      "role": "Suggests"
    },
    {
      "package": "grDevices",
      "role": "Suggests"
    },
    {
      "package": "gridExtra",
      "role": "Suggests"
    },
    {
      "package": "gson",
      "role": "Suggests"
    },
    {
      "package": "Matrix",
      "role": "Suggests"
    },
    {
      "package": "org.Hs.eg.db",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "scales",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "tibble",
      "role": "Suggests"
    },
    {
      "package": "tidyr",
      "role": "Suggests"
    },
    {
      "package": "WebGestaltR",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 75,
  "_updates": [
    {
      "week": "2025-44",
      "n": 3
    },
    {
      "week": "2025-45",
      "n": 1
    },
    {
      "week": "2025-46",
      "n": 5
    },
    {
      "week": "2025-47",
      "n": 6
    },
    {
      "week": "2025-48",
      "n": 5
    },
    {
      "week": "2025-49",
      "n": 5
    },
    {
      "week": "2025-52",
      "n": 2
    },
    {
      "week": "2026-02",
      "n": 3
    },
    {
      "week": "2026-03",
      "n": 9
    },
    {
      "week": "2026-09",
      "n": 1
    },
    {
      "week": "2026-10",
      "n": 3
    },
    {
      "week": "2026-13",
      "n": 1
    },
    {
      "week": "2026-14",
      "n": 2
    },
    {
      "week": "2026-17",
      "n": 3
    },
    {
      "week": "2026-18",
      "n": 3
    },
    {
      "week": "2026-26",
      "n": 21
    },
    {
      "week": "2026-35",
      "n": 11
    },
    {
      "week": "2026-38",
      "n": 1
    },
    {
      "week": "2026-39",
      "n": 44
    },
    {
      "week": "2026-41",
      "n": 4
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.99.8",
      "bioc": "3.24",
      "repository": "bioc"
    },
    {
      "branch": "release",
      "version": "1.32.1",
      "bioc": "3.23",
      "repository": "bioc"
    }
  ],
  "_topics": [
    "annotation",
    "genesetenrichment",
    "go",
    "kegg",
    "pathways",
    "software",
    "visualization",
    "enrichment-analysis",
    "pathway-analysis"
  ],
  "_stars": 259,
  "_contributors": [
    {
      "user": "guangchuangyu",
      "count": 423,
      "uuid": 626539
    },
    {
      "user": "huerqiang",
      "count": 261,
      "uuid": 48857018
    },
    {
      "user": "jwokaty",
      "count": 16,
      "uuid": 1744257
    },
    {
      "user": "nturaga",
      "count": 14,
      "uuid": 2746443
    },
    {
      "user": "clearmind777",
      "count": 12,
      "uuid": 139222736
    },
    {
      "user": "ivokwee",
      "count": 9,
      "uuid": 19613146
    },
    {
      "user": "gaospecial",
      "count": 4,
      "uuid": 107597
    },
    {
      "user": "xiangpin",
      "count": 3,
      "uuid": 17870644
    },
    {
      "user": "richardjacton",
      "count": 3,
      "uuid": 6893043
    },
    {
      "user": "thegrebe",
      "count": 2,
      "uuid": 101104633
    },
    {
      "user": "vobencha",
      "count": 2,
      "uuid": 2466173
    },
    {
      "user": "ning-l",
      "count": 2,
      "uuid": 31008500
    },
    {
      "user": "qscseed",
      "count": 1,
      "uuid": 22562821
    },
    {
      "user": "thomaskatkins",
      "count": 1,
      "uuid": 32600420
    },
    {
      "user": "nastiaskuba",
      "count": 1,
      "uuid": 84533119
    },
    {
      "user": "link-ny",
      "count": 1,
      "uuid": 4392950
    },
    {
      "user": "cookkate",
      "count": 1,
      "uuid": 10406459
    },
    {
      "user": "j-andrews7",
      "count": 1,
      "uuid": 10225716
    },
    {
      "user": "toledoem",
      "count": 1,
      "uuid": 8144940
    },
    {
      "user": "davorvr",
      "count": 1,
      "uuid": 42250444
    },
    {
      "user": "dcroteau-chonka",
      "count": 1,
      "uuid": 29902444
    },
    {
      "user": "altairwei",
      "count": 1,
      "uuid": 30854075
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 482,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 72261,
    "source": "https://www.bioconductor.org/packages/stats/bioc/enrichplot"
  },
  "_mentions": 249,
  "_devurl": "https://github.com/guangchuangyu/enrichplot",
  "_searchresults": 7760,
  "_abi": {
    "exports": [
      {
        "key": "enrichplot::enrichResultList",
        "hash": "eca96f91dd5e34b1"
      },
      {
        "key": "enrichplot::externalEnrichResult",
        "hash": "5b4c25adce4a3938"
      },
      {
        "key": "enrichplot::externalGseaResult",
        "hash": "9ba9e280cee7f904"
      },
      {
        "key": "enrichplot::generic:consensusmap",
        "hash": "b8c0ab6109782032"
      },
      {
        "key": "enrichplot::generic:dotplot",
        "hash": "a91b973551b3676c"
      },
      {
        "key": "enrichplot::generic:emapplot",
        "hash": "e388df79e569a88f"
      },
      {
        "key": "enrichplot::generic:goplot",
        "hash": "80484e3d065c8719"
      },
      {
        "key": "enrichplot::generic:gseaplot",
        "hash": "588c071d9d8832e8"
      },
      {
        "key": "enrichplot::generic:heatplot",
        "hash": "096940d1b5fe427c"
      },
      {
        "key": "enrichplot::generic:manhattanplot",
        "hash": "bc6b12a0eeb6ff41"
      },
      {
        "key": "enrichplot::generic:mechanismflow",
        "hash": "5fe039d7156167ea"
      },
      {
        "key": "enrichplot::generic:pairwise_termsim",
        "hash": "7a9a583bc04e0be9"
      },
      {
        "key": "enrichplot::generic:phaseplot",
        "hash": "745b13b9174b9433"
      },
      {
        "key": "enrichplot::generic:rewireplot",
        "hash": "a185f20706f0adf6"
      },
      {
        "key": "enrichplot::generic:ridgeplot",
        "hash": "5a6c0e77eb10edc0"
      },
      {
        "key": "enrichplot::generic:ssplot",
        "hash": "7195111dfba531d7"
      },
      {
        "key": "enrichplot::generic:treeplot",
        "hash": "8f3877aa35ff104b"
      },
      {
        "key": "enrichplot::generic:upsetplot",
        "hash": "1f467acca55cb910"
      },
      {
        "key": "enrichplot::generic:volplot",
        "hash": "b7216410f9e14936"
      },
      {
        "key": "enrichplot::gseaResultList",
        "hash": "8d0a67ba6a3c6394"
      }
    ],
    "imports": [
      {
        "key": "enrichit::enrichResult",
        "hash": "bb4cab25dfd56f0a"
      },
      {
        "key": "enrichit::gseaResult",
        "hash": "95e186f4cdc5455e"
      }
    ]
  },
  "_rbuild": "4.6.2",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/enrichplot.html",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/yulab-smu/enrichplot",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "as_enrichResult",
    "as_gseaResult",
    "autofacet",
    "cnetplot",
    "color_palette",
    "consensusmap",
    "dotplot",
    "dotplot2",
    "emapplot",
    "emapplot_edge_density",
    "facet_grid",
    "fortify_mnsea_contribution",
    "fortify_mnsea_subnetwork",
    "geneID",
    "geneInCategory",
    "geom_cnet_label",
    "geom_gsea_gene",
    "get_enrichplot_color",
    "ggtable",
    "ggtitle",
    "goplot",
    "gseadist",
    "gseaplot",
    "gseaplot2",
    "gsearank",
    "gseaScores",
    "heatplot",
    "hplot",
    "import_enrichr",
    "import_fgsea",
    "import_gprofiler2",
    "import_webgestalt",
    "manhattanplot",
    "mechanismflow",
    "pairwise_termsim",
    "phaseplot",
    "plot_list",
    "pmcplot",
    "rewireplot",
    "ridgeplot",
    "set_enrichplot_color",
    "ssplot",
    "theme_dose",
    "treeplot",
    "upsetplot",
    "volplot"
  ],
  "_help": [
    {
      "page": "as.data.frame.compareClusterResult",
      "title": "Convert compareClusterResult to data frame",
      "topics": [
        "as.data.frame.compareClusterResult"
      ]
    },
    {
      "page": "autofacet",
      "title": "Plotting utility functions for enrichplot package",
      "topics": [
        "autofacet"
      ]
    },
    {
      "page": "barplot.enrichResult",
      "title": "barplot",
      "topics": [
        "barplot.enrichResult"
      ]
    },
    {
      "page": "color_palette",
      "title": "Create color palette for continuous data",
      "topics": [
        "color_palette"
      ]
    },
    {
      "page": "consensusmap",
      "title": "consensusmap",
      "topics": [
        "consensusmap",
        "consensusmap,list-method",
        "consensusmap,mnseaResult-method",
        "consensusmap,nseaResult-method"
      ]
    },
    {
      "page": "dotplot",
      "title": "dotplot",
      "topics": [
        "dotplot",
        "dotplot,compareClusterResult,ANY-method",
        "dotplot,compareClusterResult-method",
        "dotplot,enrichResult-method",
        "dotplot,enrichResultList,ANY-method",
        "dotplot,enrichResultList-method",
        "dotplot,gseaResult-method",
        "dotplot,gseaResultList,ANY-method",
        "dotplot,gseaResultList-method",
        "dotplot,mnseaResult-method",
        "dotplot.compareClusterResult",
        "dotplot.enrichResult"
      ]
    },
    {
      "page": "dotplot2",
      "title": "dotplot2",
      "topics": [
        "dotplot2"
      ]
    },
    {
      "page": "emapplot",
      "title": "emapplot",
      "topics": [
        "emapplot",
        "emapplot,compareClusterResult-method",
        "emapplot,enrichResult-method",
        "emapplot,gseaResult-method",
        "emapplot,mnseaResult-method",
        "prepare_emapplot_data"
      ]
    },
    {
      "page": "emapplot_edge_density",
      "title": "Diagnose enrichment-map edge density",
      "topics": [
        "emapplot_edge_density"
      ]
    },
    {
      "page": "enrichplot_point_shape",
      "title": "Predefined color palettes",
      "topics": [
        "enrichplot_point_shape"
      ]
    },
    {
      "page": "fortify_mnsea_contribution",
      "title": "Plot-facing helpers for 'mnseaResult'",
      "topics": [
        "fortify_mnsea_contribution",
        "fortify_mnsea_subnetwork"
      ]
    },
    {
      "page": "fortify",
      "title": "fortify",
      "topics": [
        "fortify.compareClusterResult",
        "fortify.enrichResult",
        "fortify.mnseaResult",
        "fortify.nseaResult"
      ]
    },
    {
      "page": "geom_gsea_gene",
      "title": "geom_gsea_gene",
      "topics": [
        "geom_gsea_gene"
      ]
    },
    {
      "page": "get_enrichplot_color",
      "title": "Color utility functions for enrichplot package",
      "topics": [
        "get_enrichplot_color"
      ]
    },
    {
      "page": "ggtable",
      "title": "ggtable",
      "topics": [
        "ggtable"
      ]
    },
    {
      "page": "goplot",
      "title": "goplot",
      "topics": [
        "goplot",
        "goplot,enrichResult-method",
        "goplot,gseaResult-method"
      ]
    },
    {
      "page": "gseadist",
      "title": "gseadist",
      "topics": [
        "gseadist"
      ]
    },
    {
      "page": "gseaplot",
      "title": "gseaplot",
      "topics": [
        "gseaplot",
        "gseaplot,gseaResult-method",
        "gseaplot,mnseaResult-method",
        "gseaplot.gseaResult"
      ]
    },
    {
      "page": "gseaplot2",
      "title": "gseaplot2",
      "topics": [
        "gseaplot2"
      ]
    },
    {
      "page": "gsearank",
      "title": "gsearank",
      "topics": [
        "gsearank"
      ]
    },
    {
      "page": "gsInfo",
      "title": "gsInfo",
      "topics": [
        "gsInfo"
      ]
    },
    {
      "page": "heatplot",
      "title": "heatplot",
      "topics": [
        "heatplot",
        "heatplot,enrichResult-method",
        "heatplot,gseaResult-method",
        "heatplot,mnseaResult-method",
        "prepare_heatplot_data"
      ]
    },
    {
      "page": "hplot",
      "title": "hplot",
      "topics": [
        "hplot"
      ]
    },
    {
      "page": "import_enrichr",
      "title": "import_enrichr",
      "topics": [
        "import_enrichr"
      ]
    },
    {
      "page": "import_fgsea",
      "title": "import_fgsea",
      "topics": [
        "import_fgsea"
      ]
    },
    {
      "page": "import_gprofiler2",
      "title": "import_gprofiler2",
      "topics": [
        "import_gprofiler2"
      ]
    },
    {
      "page": "import_webgestalt",
      "title": "import_webgestalt",
      "topics": [
        "import_webgestalt"
      ]
    },
    {
      "page": "manhattanplot",
      "title": "manhattanplot",
      "topics": [
        "manhattanplot",
        "manhattanplot,compareClusterResult,ANY-method",
        "manhattanplot,compareClusterResult-method",
        "manhattanplot,enrichResult-method",
        "manhattanplot,enrichResultList,ANY-method",
        "manhattanplot,enrichResultList-method",
        "manhattanplot,gseaResult-method",
        "manhattanplot,gseaResultList,ANY-method",
        "manhattanplot,gseaResultList-method",
        "manhattanplot,list,ANY-method",
        "manhattanplot,list-method"
      ]
    },
    {
      "page": "mechanismflow",
      "title": "mechanismflow",
      "topics": [
        "mechanismflow",
        "mechanismflow,list-method",
        "mechanismflow,mnseaResult-method",
        "mechanismflow,nseaResult-method"
      ]
    },
    {
      "page": "pairwise_termsim",
      "title": "pairwise_termsim",
      "topics": [
        "pairwise_termsim",
        "pairwise_termsim,compareClusterResult-method",
        "pairwise_termsim,enrichResult-method",
        "pairwise_termsim,gseaResult-method",
        "pairwise_termsim,mnseaResult-method",
        "pairwise_termsim.compareClusterResult",
        "pairwise_termsim.enrichResult",
        "prepare_pairwise_termsim_data"
      ]
    },
    {
      "page": "phaseplot",
      "title": "phaseplot",
      "topics": [
        "phaseplot",
        "phaseplot,mnseaResult-method",
        "phaseplot,nseaResult-method"
      ]
    },
    {
      "page": "plotting.clusterProfile",
      "title": "Internal plot function for plotting compareClusterResult",
      "topics": [
        "plotting.clusterProfile"
      ]
    },
    {
      "page": "pmcplot",
      "title": "pmcplot",
      "topics": [
        "pmcplot"
      ]
    },
    {
      "page": "cnetplot",
      "title": "Category-Gene-Network Plot",
      "topics": [
        "cnetplot.compareClusterResult",
        "cnetplot.enrichResult",
        "cnetplot.gseaResult",
        "cnetplot.mnseaResult",
        "prepare_cnetplot_data",
        "prepare_mnsea_cnetplot_data"
      ]
    },
    {
      "page": "rewireplot",
      "title": "rewireplot",
      "topics": [
        "rewireplot",
        "rewireplot,mnseaResult-method",
        "rewireplot,nseaResult-method"
      ]
    },
    {
      "page": "ridgeplot",
      "title": "ridgeplot",
      "topics": [
        "ridgeplot",
        "ridgeplot,gseaResult-method",
        "ridgeplot,mnseaResult-method",
        "ridgeplot.gseaResult"
      ]
    },
    {
      "page": "set_enrichplot_color",
      "title": "Helper function to set color scale for enrichplot",
      "topics": [
        "set_enrichplot_color"
      ]
    },
    {
      "page": "ssplot",
      "title": "ssplot",
      "topics": [
        "ssplot",
        "ssplot,compareClusterResult-method",
        "ssplot,enrichResult-method",
        "ssplot,gseaResult-method",
        "ssplot,mnseaResult-method",
        "ssplot.compareClusterResult",
        "ssplot.enrichResult"
      ]
    },
    {
      "page": "treeplot",
      "title": "treeplot",
      "topics": [
        "treeplot",
        "treeplot,compareClusterResult-method",
        "treeplot,enrichResult-method",
        "treeplot,gseaResult-method",
        "treeplot_internal"
      ]
    },
    {
      "page": "upsetplot-methods",
      "title": "upsetplot method",
      "topics": [
        "upsetplot",
        "upsetplot,enrichResult,ANY-method",
        "upsetplot,enrichResult-method",
        "upsetplot,gseaResult",
        "upsetplot,gseaResult-method",
        "upsetplot,mnseaResult",
        "upsetplot,mnseaResult-method"
      ]
    },
    {
      "page": "volplot",
      "title": "volplot",
      "topics": [
        "volplot",
        "volplot,enrichResult-method",
        "volplot.enrichResult"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/enrichplot/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "AnnotationDbi",
    "ape",
    "aplot",
    "askpass",
    "base64enc",
    "Biobase",
    "BiocBaseUtils",
    "BiocGenerics",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "bslib",
    "cachem",
    "cli",
    "cluster",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "DelayedArray",
    "digest",
    "DOSE",
    "dplyr",
    "enrichit",
    "evaluate",
    "farver",
    "fastmap",
    "fontawesome",
    "fontBitstreamVera",
    "fontLiberation",
    "fontquiver",
    "fs",
    "gdtools",
    "generics",
    "GenomicRanges",
    "ggforce",
    "ggfun",
    "ggiraph",
    "ggnewscale",
    "ggplot2",
    "ggplotify",
    "ggrepel",
    "ggtangle",
    "ggtree",
    "glue",
    "GO.db",
    "GOSemSim",
    "gridGraphics",
    "gson",
    "gtable",
    "highr",
    "htmltools",
    "htmlwidgets",
    "httr",
    "igraph",
    "IRanges",
    "isoband",
    "jquerylib",
    "jsonlite",
    "KEGGREST",
    "knitr",
    "labeling",
    "lattice",
    "lazyeval",
    "lifecycle",
    "magrittr",
    "MASS",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "memoise",
    "mime",
    "nlme",
    "openssl",
    "patchwork",
    "pillar",
    "pkgconfig",
    "plyr",
    "png",
    "polyclip",
    "purrr",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "RcppEigen",
    "reshape2",
    "rlang",
    "rmarkdown",
    "RSQLite",
    "S4Arrays",
    "S4Vectors",
    "S7",
    "sass",
    "scales",
    "scatterpie",
    "Seqinfo",
    "SparseArray",
    "stringi",
    "stringr",
    "SummarizedExperiment",
    "sys",
    "systemfonts",
    "tibble",
    "tidydr",
    "tidyr",
    "tidyselect",
    "tidytree",
    "tinytex",
    "treeio",
    "tweenr",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "XVector",
    "yaml",
    "yulab.utils"
  ],
  "_vignettes": [
    {
      "source": "enrichplot.Rmd",
      "filename": "enrichplot.html",
      "title": "Visualization of Functional Enrichment Result",
      "author": "Guangchuang Yu",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2017-11-27 17:43:56",
      "modified": "2026-08-27 13:21:49",
      "commits": 17
    }
  ],
  "_score": 16.83646726553957,
  "_indexed": true,
  "_nocasepkg": "enrichplot",
  "_universes": [
    "bioc",
    "guangchuangyu"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.99.8",
      "date": "2026-11-01T13:01:55.000Z",
      "distro": "resolute",
      "commit": "fe1cbf4ce17299cbb0dd516a4534148f0861319c",
      "fileid": "https://r2.ropensci.org/f5a34b92156c93a95bdf02af4436124cd3f852262878121a9f6a9c0de5831863",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308268313"
    },
    {
      "r": "4.6.2",
      "os": "linux",
      "version": "1.99.8",
      "date": "2026-11-01T13:01:38.000Z",
      "distro": "resolute",
      "commit": "fe1cbf4ce17299cbb0dd516a4534148f0861319c",
      "fileid": "https://r2.ropensci.org/9113fa82dafd3b47eb4dc98cf481e21f2f549f9c2534e80c4a49126be260926c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308268313"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.99.8",
      "date": "2026-11-01T13:11:05.000Z",
      "commit": "fe1cbf4ce17299cbb0dd516a4534148f0861319c",
      "fileid": "https://r2.ropensci.org/8f39394734f1a5ee09e8bd795d5683352db30c21ff583701ce9e76e9dd3709fc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308268313"
    },
    {
      "r": "4.6.2",
      "os": "mac",
      "version": "1.99.8",
      "date": "2026-11-01T13:10:35.000Z",
      "commit": "fe1cbf4ce17299cbb0dd516a4534148f0861319c",
      "fileid": "https://r2.ropensci.org/2a05077f77e1e9f1d586c12c605e19ef01d2fa1707b0364622c8b324aec8ada4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308268313"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.99.8",
      "date": "2026-11-01T12:59:48.000Z",
      "commit": "fe1cbf4ce17299cbb0dd516a4534148f0861319c",
      "fileid": "https://r2.ropensci.org/96171f5364fafa6cc8c95644c45cf7842b475a246ec5ea179fd8449a5213b867",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308268313"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.99.8",
      "date": "2026-11-01T12:58:39.000Z",
      "commit": "fe1cbf4ce17299cbb0dd516a4534148f0861319c",
      "fileid": "https://r2.ropensci.org/34b9f2293f90e1a58cf74a9dcbce5621e35c74aeea76c0f86f98f68a5bf259e7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308268313"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.99.8",
      "date": "2026-11-01T12:58:40.000Z",
      "commit": "fe1cbf4ce17299cbb0dd516a4534148f0861319c",
      "fileid": "https://r2.ropensci.org/06a0d7dbec8caf9ddaaa74ce8eeb16901c00816a463405f2f736b9e658fa4251",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308268313"
    },
    {
      "r": "4.6.2",
      "os": "win",
      "version": "1.99.8",
      "date": "2026-11-01T12:58:32.000Z",
      "commit": "fe1cbf4ce17299cbb0dd516a4534148f0861319c",
      "fileid": "https://r2.ropensci.org/ac27b0f5e7530ab10c7f8f39e74165f6c54eaef760e919bf7356fb791693dcee",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41308268313"
    }
  ]
}