Package: eisaR 1.25.0
Michael Stadler
eisaR: Exon-Intron Split Analysis (EISA) in R
Exon-intron split analysis (EISA) uses ordinary RNA-seq data to measure changes in mature RNA and pre-mRNA reads across different experimental conditions to quantify transcriptional and post-transcriptional regulation of gene expression. For details see Gaidatzis et al., Nat Biotechnol 2015. doi: 10.1038/nbt.3269. eisaR implements the major steps of EISA in R.
Authors:
eisaR_1.25.0.tar.gz
eisaR_1.25.0.zip(r-4.7)eisaR_1.25.0.zip(r-4.6)eisaR_1.25.0.zip(r-4.5)
eisaR_1.25.0.tgz(r-4.6-any)eisaR_1.25.0.tgz(r-4.5-any)
eisaR_1.25.0.tar.gz(r-4.7-any)eisaR_1.25.0.tar.gz(r-4.6-any)
eisaR_1.25.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
eisaR/json (API)
NEWS
| # Install 'eisaR' in R: |
| install.packages('eisaR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/fmicompbio/eisar/issues
On BioConductor:eisaR-1.25.0(bioc 3.24)eisaR-1.24.0(bioc 3.23)
transcriptiongeneexpressiongeneregulationfunctionalgenomicstranscriptomicsregressionrnaseq
Last updated from:939131c925. Checks:8 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 259 | ||
| linux-devel-x86_64 | NOTE | 483 | ||
| source / vignettes | OK | 454 | ||
| linux-release-x86_64 | NOTE | 444 | ||
| macos-release-arm64 | NOTE | 245 | ||
| macos-oldrel-arm64 | NOTE | 323 | ||
| windows-devel | NOTE | 306 | ||
| windows-release | NOTE | 308 | ||
| windows-oldrel | NOTE | 314 | ||
| wasm-release | OK | 224 |
Exports:exportToGtfgetFeatureRangesgetRegionsFromTxDbgetTx2GeneplotEISArunEISA
Dependencies:abindBiobaseBiocGenericsDelayedArrayedgeRgenericsGenomicRangesIRangeslatticelimmalocfitMatrixMatrixGenericsmatrixStatsS4ArraysS4VectorsSeqinfoSparseArraystatmodSummarizedExperimentXVector
Generating reference files for spliced and unspliced abundance estimation with alignment-free methods
Rendered fromrna-velocity.Rmdusingknitr::rmarkdownon May 20 2026.Last update: 2025-09-12
Started: 2020-03-12
Using eisaR for Exon-Intron Split Analysis (EISA)
Rendered fromeisaR.Rmdusingknitr::rmarkdownon May 20 2026.Last update: 2025-09-12
Started: 2018-11-29
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Export GRangesList to GTF | exportToGtf |
| Generate a GRangesList object with feature ranges | getFeatureRanges |
| Get exonic/gene body regions from a transcript database. | getRegionsFromTxDb |
| Generate a transcript-to-gene mapping from a GRangesList | getTx2Gene |
| Visualize the results from an exon-intron split analysis. | plotEISA |
| Run Exon-Intron Split Analysis. | runEISA |
