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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "eisaR" in publications use:'
type: software
license: GPL-3.0-only
title: 'eisaR: Exon-Intron Split Analysis (EISA) in R'
version: 1.17.0
abstract: 'Exon-intron split analysis (EISA) uses ordinary RNA-seq data to measure
  changes in mature RNA and pre-mRNA reads across different experimental conditions
  to quantify transcriptional and post-transcriptional regulation of gene expression.
  For details see Gaidatzis et al., Nat Biotechnol 2015. doi: 10.1038/nbt.3269. eisaR
  implements the major steps of EISA in R.'
authors:
- family-names: Stadler
  given-names: Michael
  email: michael.stadler@fmi.ch
- family-names: Gaidatzis
  given-names: Dimos
  email: dimosthenis.gaidatzis@fmi.ch
- family-names: Burger
  given-names: Lukas
  email: lukas.burger@fmi.ch
- family-names: Soneson
  given-names: Charlotte
  email: charlotte.soneson@fmi.ch
preferred-citation:
  type: manual
  title: 'eisaR: Exon-Intron Split Anaalysis (EISA) in R'
  authors:
  - family-names: Stadler
    given-names: Michael B
  - family-names: Gaidatzis
    given-names: Dimos
    email: dimosthenis.gaidatzis@fmi.ch
  - family-names: Burger
    given-names: Lukas
    email: lukas.burger@fmi.ch
  - family-names: Soneson
    given-names: Charlotte
    email: charlotte.soneson@fmi.ch
  year: '2020'
  notes: R package version 1.0
repository: https://bioc.r-universe.dev
repository-code: https://github.com/fmicompbio/eisaR
url: https://github.com/fmicompbio/eisaR
contact:
- family-names: Stadler
  given-names: Michael
  email: michael.stadler@fmi.ch
references:
- type: article
  title: Analysis of intronic and exonic reads in RNA-seq data characterizes transcriptional
    and post-transcriptional regulation
  authors:
  - family-names: Gaidatzis
    given-names: Dimos
  - family-names: Burger
    given-names: Lukas
  - family-names: Stadler
    given-names: Michael B
  journal: Nature Biotechnology
  volume: '33'
  issue: '7'
  year: '2015'
  notes: PMID:26098447
  doi: 10.1038/nbt.3269
  start: '722'
  end: '729'
- type: article
  title: Preprocessing choices affect RNA velocity results for droplet scRNA-seq data
  authors:
  - family-names: Soneson
    given-names: Charlotte
  - family-names: Srivastava
    given-names: Avi
  - family-names: Patro
    given-names: Rob
  - family-names: Stadler
    given-names: Michael B
  journal: PLoS Computational Biology
  volume: '17'
  issue: '1'
  year: '2021'
  notes: PMID:33428615
  doi: 10.1371/journal.pcbi.1008585
  start: e1008585