Package: drugTargetInteractions 1.15.0
Thomas Girke
drugTargetInteractions: Drug-Target Interactions
Provides utilities for identifying drug-target interactions for sets of small molecule or gene/protein identifiers. The required drug-target interaction information is obained from a local SQLite instance of the ChEMBL database. ChEMBL has been chosen for this purpose, because it provides one of the most comprehensive and best annotatated knowledge resources for drug-target information available in the public domain.
Authors:
drugTargetInteractions_1.15.0.tar.gz
drugTargetInteractions_1.15.0.zip(r-4.5)drugTargetInteractions_1.15.0.zip(r-4.4)drugTargetInteractions_1.15.0.zip(r-4.3)
drugTargetInteractions_1.15.0.tgz(r-4.4-any)drugTargetInteractions_1.15.0.tgz(r-4.3-any)
drugTargetInteractions_1.15.0.tar.gz(r-4.5-noble)drugTargetInteractions_1.15.0.tar.gz(r-4.4-noble)
drugTargetInteractions_1.15.0.tgz(r-4.4-emscripten)drugTargetInteractions_1.15.0.tgz(r-4.3-emscripten)
drugTargetInteractions.pdf |drugTargetInteractions.html✨
drugTargetInteractions/json (API)
NEWS
| # Install 'drugTargetInteractions' in R: |
| install.packages('drugTargetInteractions', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/girke-lab/drugtargetinteractions/issues
On BioConductor:drugTargetInteractions-1.15.0(bioc 3.21)drugTargetInteractions-1.14.0(bioc 3.20)
cheminformaticsbiomedicalinformaticspharmacogeneticspharmacogenomicsproteomicsmetabolomics
Last updated 25 days agofrom:262cba990e. Checks:OK: 1 WARNING: 4 NOTE: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 31 2024 |
| R-4.5-win | WARNING | Oct 31 2024 |
| R-4.5-linux | WARNING | Oct 31 2024 |
| R-4.4-win | WARNING | Oct 31 2024 |
| R-4.4-mac | NOTE | Oct 31 2024 |
| R-4.3-win | WARNING | Oct 31 2024 |
| R-4.3-mac | NOTE | Oct 31 2024 |
Exports:cmpIdMappingdownloadChemblDbdownloadUniChemdrugTargetAnnotdrugTargetAnnotTabledrugTargetBioactivitygenConfiggetDrugTargetgetParalogsgetSymEnsUpgetUniprotIDsprocessDrugagerunDrugTarget_Annot_BioassaytransformTTD
Dependencies:abindAnnotationDbiAnnotationFilteraskpassBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocParallelbiomaRtBiostringsbitbit64bitopsblobcachemclicodetoolscpp11crayoncurlDBIdbplyrDelayedArraydigestdplyrensembldbfansifastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgluehmshttpcachehttrhttr2IRangesjsonliteKEGGRESTlambda.rlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigplogrpngprettyunitsprogressProtGenericspurrrR6rappdirsRCurlrestfulrRhtslibrjsonrjsonconsrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorssnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsUniProt.wsutf8vctrswithrXMLxml2XVectoryamlzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Drug-Target Interactions | drugTargetInteractions-package drugTargetInteractions |
| cmpIdMapping | cmpIdMapping |
| downloadChemblDb | downloadChemblDb |
| downloadUniChem | downloadUniChem |
| drugTargetAnnot | drugTargetAnnot queryBy |
| drugTargetAnnotTable | drugTargetAnnotTable |
| drugTargetBioactivity | drugTargetBioactivity |
| genConfig | genConfig |
| getDrugTarget | getDrugTarget |
| getParalogs | getParalogs |
| Gene to Protein ID Mappings | getSymEnsUp |
| Retrieve UniProt IDs via ID and Cluster Mappings | getUniprotIDs |
| processDrugage | processDrugage |
| runDrugTarget_Annot_Bioassay | runDrugTarget_Annot_Bioassay |
| transformTTD | transformTTD |
