Package: drugTargetInteractions 1.15.0

Thomas Girke

drugTargetInteractions: Drug-Target Interactions

Provides utilities for identifying drug-target interactions for sets of small molecule or gene/protein identifiers. The required drug-target interaction information is obained from a local SQLite instance of the ChEMBL database. ChEMBL has been chosen for this purpose, because it provides one of the most comprehensive and best annotatated knowledge resources for drug-target information available in the public domain.

Authors:Thomas Girke [cre, aut]

drugTargetInteractions_1.15.0.tar.gz
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drugTargetInteractions.pdf |drugTargetInteractions.html✨
drugTargetInteractions/json (API)
NEWS

# Install 'drugTargetInteractions' in R:
install.packages('drugTargetInteractions', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/girke-lab/drugtargetinteractions/issues

On BioConductor:drugTargetInteractions-1.15.0(bioc 3.21)drugTargetInteractions-1.14.0(bioc 3.20)

cheminformaticsbiomedicalinformaticspharmacogeneticspharmacogenomicsproteomicsmetabolomics

4.34 score 1 stars 11 scripts 142 downloads 14 exports 100 dependencies

Last updated 2 months agofrom:262cba990e. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 30 2024
R-4.5-winNOTENov 30 2024
R-4.5-linuxNOTENov 30 2024
R-4.4-winNOTENov 30 2024
R-4.4-macNOTENov 30 2024
R-4.3-winNOTENov 30 2024
R-4.3-macNOTENov 30 2024

Exports:cmpIdMappingdownloadChemblDbdownloadUniChemdrugTargetAnnotdrugTargetAnnotTabledrugTargetBioactivitygenConfiggetDrugTargetgetParalogsgetSymEnsUpgetUniprotIDsprocessDrugagerunDrugTarget_Annot_BioassaytransformTTD

Dependencies:abindAnnotationDbiAnnotationFilteraskpassBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocParallelbiomaRtBiostringsbitbit64bitopsblobcachemclicodetoolscpp11crayoncurlDBIdbplyrDelayedArraydigestdplyrensembldbfansifastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgluehmshttpcachehttrhttr2IRangesjsonliteKEGGRESTlambda.rlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigplogrpngprettyunitsprogressProtGenericspurrrR6rappdirsRCurlrestfulrRhtslibrjsonrjsonconsrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorssnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsUniProt.wsutf8vctrswithrXMLxml2XVectoryamlzlibbioc

Drug-Target Interactions

Authors: Kevin Horan, Yuzhu Duan, Austin Leong, Dan Evans, Jamison McCorrison, Nicholas Schork and Thomas Girke

Rendered fromdrugTargetInteractions.Rmdusingknitr::rmarkdownon Nov 30 2024.

Last update: 2021-08-26
Started: 2020-11-30

Readme and manuals

Help Manual

Help pageTopics
Drug-Target InteractionsdrugTargetInteractions-package drugTargetInteractions
cmpIdMappingcmpIdMapping
downloadChemblDbdownloadChemblDb
downloadUniChemdownloadUniChem
drugTargetAnnotdrugTargetAnnot queryBy
drugTargetAnnotTabledrugTargetAnnotTable
drugTargetBioactivitydrugTargetBioactivity
genConfiggenConfig
getDrugTargetgetDrugTarget
getParalogsgetParalogs
Gene to Protein ID MappingsgetSymEnsUp
Retrieve UniProt IDs via ID and Cluster MappingsgetUniprotIDs
processDrugageprocessDrugage
runDrugTarget_Annot_BioassayrunDrugTarget_Annot_Bioassay
transformTTDtransformTTD