Package: doppelgangR 1.35.0

Levi Waldron

doppelgangR: Identify likely duplicate samples from genomic or meta-data

The main function is doppelgangR(), which takes as minimal input a list of ExpressionSet object, and searches all list pairs for duplicated samples. The search is based on the genomic data (exprs(eset)), phenotype/clinical data (pData(eset)), and "smoking guns" - supposedly unique identifiers found in pData(eset).

Authors:Levi Waldron [aut, cre], Markus Reister [aut, ctb], Marcel Ramos [ctb]

doppelgangR_1.35.0.tar.gz
doppelgangR_1.35.0.zip(r-4.5)doppelgangR_1.35.0.zip(r-4.4)doppelgangR_1.35.0.zip(r-4.3)
doppelgangR_1.35.0.tgz(r-4.5-any)doppelgangR_1.35.0.tgz(r-4.4-any)doppelgangR_1.35.0.tgz(r-4.3-any)
doppelgangR_1.35.0.tar.gz(r-4.5-noble)doppelgangR_1.35.0.tar.gz(r-4.4-noble)
doppelgangR_1.35.0.tgz(r-4.4-emscripten)doppelgangR_1.35.0.tgz(r-4.3-emscripten)
doppelgangR.pdf |doppelgangR.html✨
doppelgangR/json (API)
NEWS

# Install 'doppelgangR' in R:
install.packages('doppelgangR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lwaldron/doppelgangr/issues

On BioConductor:doppelgangR-1.35.0(bioc 3.21)doppelgangR-1.34.0(bioc 3.20)

immunooncologyrnaseqmicroarraygeneexpressionqualitycontrolbioconductor-package

6.67 score 5 stars 31 scripts 412 downloads 3 mentions 19 exports 71 dependencies

Last updated 4 months agofrom:0cd0783571. Checks:1 OK, 6 NOTE, 1 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 28 2025
R-4.5-winNOTEJan 28 2025
R-4.5-macWARNINGJan 28 2025
R-4.5-linuxNOTEJan 28 2025
R-4.4-winNOTEJan 28 2025
R-4.4-macNOTEJan 28 2025
R-4.3-winNOTEJan 28 2025
R-4.3-macNOTEJan 28 2025

Exports:colFindercorFinderdoppelgangRdstmst.mleoutlierFinderphenoDistphenoFinderplotprintpstqstrstshowsmokingGunFinderst.mlesummaryvectorHammingDistvectorWeightedDist

Dependencies:abindannotateAnnotationDbiaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64blobcachemclicodetoolscpp11crayoncurlDBIDelayedArraydigestedgeRfastmapformatRfutile.loggerfutile.optionsgenefiltergenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrimputeIRangesjsonliteKEGGRESTlambda.rlatticelifecyclelimmalocfitMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemnormtnlmeopensslpkgconfigplogrpngR6rlangRSQLiteS4ArraysS4VectorssnowSparseArraystatmodSummarizedExperimentsurvivalsvasysUCSC.utilsvctrsXMLxtableXVector

doppelgangR

Levi Waldron

Rendered fromdoppelgangR.Rmdusingknitr::rmarkdownon Jan 28 2025.

Last update: 2016-03-17
Started: 2016-03-17