Package: doppelgangR 1.33.0
Levi Waldron
doppelgangR: Identify likely duplicate samples from genomic or meta-data
The main function is doppelgangR(), which takes as minimal input a list of ExpressionSet object, and searches all list pairs for duplicated samples. The search is based on the genomic data (exprs(eset)), phenotype/clinical data (pData(eset)), and "smoking guns" - supposedly unique identifiers found in pData(eset).
Authors:
doppelgangR_1.33.0.tar.gz
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doppelgangR.pdf |doppelgangR.html✨
doppelgangR/json (API)
NEWS
| # Install 'doppelgangR' in R: |
| install.packages('doppelgangR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/lwaldron/doppelgangr/issues
On BioConductor:doppelgangR-1.33.0(bioc 3.20)doppelgangR-1.32.0(bioc 3.19)
Last updated 2 months agofrom:a2e666d7db
Exports:colFindercorFinderdoppelgangRdstmst.mleoutlierFinderphenoDistphenoFinderplotprintpstqstrstshowsmokingGunFinderst.mlesummaryvectorHammingDistvectorWeightedDist
Dependencies:abindannotateAnnotationDbiaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64blobcachemclicodetoolscpp11crayoncurlDBIDelayedArraydigestedgeRfastmapformatRfutile.loggerfutile.optionsgenefilterGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrimputeIRangesjsonliteKEGGRESTlambda.rlatticelifecyclelimmalocfitMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemnormtnlmeopensslpkgconfigplogrpngR6RcpprlangRSQLiteS4ArraysS4VectorssnowSparseArraystatmodSummarizedExperimentsurvivalsvasysUCSC.utilsvctrsXMLxtableXVectorzlibbioc
