Package: dmGsea 1.3.1

Zongli Xu

dmGsea: Efficient Gene Set Enrichment Analysis for DNA Methylation Data

The R package dmGsea provides efficient gene set enrichment analysis specifically for DNA methylation data. It addresses key biases, including probe dependency and varying probe numbers per gene. The package supports Illumina 450K, EPIC, and mouse methylation arrays. Users can also apply it to other omics data by supplying custom probe-to-gene mapping annotations. dmGsea is flexible, fast, and well-suited for large-scale epigenomic studies.

Authors:Zongli Xu [cre, aut], Alison Motsinger-Reif [aut], Liang Niu [aut]

dmGsea_1.3.1.tar.gz
dmGsea_1.3.1.zip(r-4.7)dmGsea_1.3.1.zip(r-4.6)dmGsea_1.3.1.zip(r-4.5)
dmGsea_1.3.1.tgz(r-4.6-any)dmGsea_1.3.1.tgz(r-4.5-any)
dmGsea_1.3.1.tar.gz(r-4.7-any)dmGsea_1.3.1.tar.gz(r-4.6-any)
dmGsea_1.3.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
dmGsea/json (API)
NEWS

# Install 'dmGsea' in R:
install.packages('dmGsea', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:dmGsea-1.3.0(bioc 3.24)dmGsea-1.2.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

genesetenrichmentpathwaysdnamethylationproteomicssequencingcopynumbervariationgeneexpressiongenomicvariationcoverage

4.74 score 3 scripts 282 downloads 10 exports 52 dependencies

Last updated from:67d9347086. Checks:1 NOTE, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE435
linux-devel-x86_64OK727
source / vignettesOK577
linux-release-x86_64OK748
macos-release-arm64OK516
macos-oldrel-arm64OK425
windows-develOK599
windows-releaseOK456
windows-oldrelOK553
wasm-releaseOK425

Exports:geneID2geneNamegetGOgetIlluminaAnnotationgetKEGGgetMSigDBgetReactomegsGenegsPGgsProbegsRank

Dependencies:abindAnnotationDbiaskpassBHBiasedUrnBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIDelayedArraydqrngfastmapgenericsGenomicRangesgluehttrIRangesjsonliteKEGGRESTlatticelifecyclemathjaxrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpkgconfigpngpoolrR6RcpprlangRSQLiteS4ArraysS4VectorsSeqinfositmoSparseArraySummarizedExperimentsysvctrsXVector

dmGsea User's Guide

Rendered fromdmGsea.Rmdusingknitr::rmarkdownon May 21 2026.

Last update: 2026-01-12
Started: 2025-01-19