Package: diggitdata 1.45.0

Mariano Javier Alvarez

diggitdata: Example data for the diggit package

This package provides expression profile and CNV data for glioblastoma from TCGA, and transcriptional and post-translational regulatory networks assembled with the ARACNe and MINDy algorithms, respectively.

Authors:Mariano Javier Alvarez

diggitdata_1.45.0.tar.gz
diggitdata_1.45.0.tar.gz(r-4.7-any)diggitdata_1.45.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
diggitdata/json (API)

# Install 'diggitdata' in R:

install.packages('diggitdata', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

gbmCNV - Human glioblastoma TCGA copy number variation (CNV) dataset
gbmCNVnormal - Human normal blood TCGA copy number variation (CNV) dataset
gbmExprs - Human glioblastoma mRNA expression dataset from TCGA
gbmMindy - Post-translational regulatory network for human glioblatoma
gbmTFregulon - Transcriptional regulatory network for human glioblatoma

On BioConductor:diggitdata-1.45.0(data/experiment 3.24)diggitdata-1.44.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

experimentdata cancer datapkg

3.30 score 5 scripts 0 exports 79 dependencies

Last updated from:0300b11037. Checks:1 ERROR, 3 OK. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	ERROR	148
linux-devel	OK	243
source / vignettes	OK	235
linux-release	OK	232

Exports:

Dependencies:askpass base64enc Biobase BiocGenerics bslib cachem class cli cpp11 crosstalk curl data.table digest dplyr e1071 evaluate farver fastmap fontawesome fs generics ggplot2 glue gtable highr htmltools htmlwidgets httr isoband jquerylib jsonlite kernlab KernSmooth knitr labeling later lattice lazyeval lifecycle magrittr MASS Matrix memoise mime mixtools nlme openssl otel pillar pkgconfig plotly promises proxy purrr R6 rappdirs RColorBrewer Rcpp rlang rmarkdown S7 sass scales segmented stringi stringr survival sys tibble tidyr tidyselect tinytex utf8 vctrs viper viridisLite withr xfun yaml

Using bcellViper

Overview of diggitdata data package

Rendered fromdiggitdata.Rnwusingutils::Sweave

Last update: 2015-03-13
Started: 2015-03-13

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Datasets and network models required for the examples in the diggit package	diggitdata-package diggitdata
Transcriptional regulatory network for human glioblatoma	gbmTFregulon
Human glioblastoma TCGA copy number variation (CNV) dataset	gbmCNV
Human normal blood TCGA copy number variation (CNV) dataset	gbmCNVnormal
Human glioblastoma mRNA expression dataset from TCGA	gbmExprs
Post-translational regulatory network for human glioblatoma	gbmMindy