Package: deltaGseg 1.47.0
Diana Low
deltaGseg: deltaGseg
Identifying distinct subpopulations through multiscale time series analysis
Authors:
deltaGseg_1.47.0.tar.gz
deltaGseg_1.47.0.zip(r-4.5)deltaGseg_1.47.0.zip(r-4.4)deltaGseg_1.47.0.zip(r-4.3)
deltaGseg_1.47.0.tgz(r-4.4-any)deltaGseg_1.47.0.tgz(r-4.3-any)
deltaGseg_1.47.0.tar.gz(r-4.5-noble)deltaGseg_1.47.0.tar.gz(r-4.4-noble)
deltaGseg_1.47.0.tgz(r-4.4-emscripten)deltaGseg_1.47.0.tgz(r-4.3-emscripten)
deltaGseg.pdf |deltaGseg.html✨
deltaGseg/json (API)
NEWS
| # Install 'deltaGseg' in R: |
| install.packages('deltaGseg', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- pvals - Pvalues data
- simtraj - Sample trajectory series
- simtraj.tr - Sample trajectory series
- simtraj.tr2 - Sample trajectory series
- traj1 - Sample trajectory series
- traj1.denoise - Sample trajectory series
- traj1.ss - Sample trajectory series
- traj1.tr - Sample trajectory series
On BioConductor:deltaGseg-1.47.0(bioc 3.21)deltaGseg-1.46.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
proteomicstimecoursevisualizationclustering
Last updated 2 months agofrom:6042fb095f. Checks:OK: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 29 2024 |
| R-4.5-win | WARNING | Nov 29 2024 |
| R-4.5-linux | WARNING | Nov 29 2024 |
| R-4.4-win | WARNING | Nov 29 2024 |
| R-4.4-mac | WARNING | Nov 29 2024 |
| R-4.3-win | WARNING | Nov 29 2024 |
| R-4.3-mac | WARNING | Nov 29 2024 |
Exports:chooseBreaksclusterPVclusterSegmentsdenoiseSegmentsdiagnosticPlotsgetAVDgetBreaksgetIntervalsgetSegmentsgetTNamesgetTrajparseTrajplotplotDiffshowsplitTrajtransformSeries
Dependencies:changepointclicolorspacecurlfansifarverfBasicsggplot2gluegssgtableisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrpvclustquadprogquantmodR6RColorBrewerRcppreshaperlangscalesspatialstabledisttibbletimeDatetimeSeriestseriesTTRutf8vctrsviridisLitewavethreshwithrxtszoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Choose a given number of breakpoints in a set of trajectories. | chooseBreaks |
| chooseBreaks | chooseBreaks,list,numeric-method chooseBreaks-methods |
| clusterPV | clusterPV |
| clusterPV | clusterPV,SegTrajectories-method clusterPV-methods |
| clusterSegments | clusterSegments |
| clusterSegments | clusterSegments,SegTrajectories-method clusterSegments-methods |
| deltaGseg | deltaGseg |
| Wavelet denoising of trajectory series (segments) | denoiseSegments |
| denoiseSegments | denoiseSegments,Trajectories-method denoiseSegments,TransTrajectories-method denoiseSegments-methods |
| diagnosticPlots | diagnosticPlots |
| diagnosticPlots | diagnosticPlots,SegSeriesTrajectories-method diagnosticPlots-methods |
| getAVD | getAVD |
| 'getAVD' | getAVD,Trajectories-method getAVD,TransTrajectories-method getAVD-methods |
| getBreaks | getBreaks |
| getBreaks | getBreaks,TransTrajectories-method getBreaks-methods |
| getIntervals | getIntervals |
| getIntervals | getIntervals,SegSeriesTrajectories-method getIntervals-methods |
| getSegments | getSegments |
| getSegments | getSegments,SegSeriesTrajectories-method getSegments,SegTrajectories-method getSegments-methods |
| getTNames | getTNames |
| Retrieve filenames of trajectories | getTNames,Trajectories-method getTNames,TransTrajectories-method getTNames-methods |
| getTraj | getTraj |
| getTrajectories | getTraj,Trajectories-method getTraj,TransTrajectories-method getTraj-methods |
| Reads in files containing trajectory data | parseTraj |
| Plot Trajectories-related objects | plot plot,SegSeriesTrajectories-method plot,SegTrajectories-method plot,Trajectories-method plot,TransTrajectories-method plot-methods |
| plotDiff | plotDiff |
| plotDiff | plotDiff,TransTrajectories-method plotDiff-methods |
| pvalues data | pvals |
| Class '"SegSeriesTrajectories"' | SegSeriesTrajectories-class |
| Class '"SegTrajectories"' | SegTrajectories-class |
| ~~ Methods for Function 'show' ~~ | show,SegSeriesTrajectories-method show,SegTrajectories-method show,Trajectories-method show,TransTrajectories-method show-methods |
| Sample trajectory series | simtraj |
| Sample trajectory series | simtraj.tr |
| Sample trajectory series | simtraj.tr2 |
| Identify Breakpoints in a Trajectory | splitTraj |
| splitTraj | splitTraj,Trajectories-method splitTraj-methods |
| Sample trajectory series | traj1 |
| Sample trajectory series | traj1.denoise |
| Sample trajectory series | traj1.ss |
| Sample trajectory series | traj1.tr |
| Class '"Trajectories"' | Trajectories-class |
| Transforms a Non-Stationary Series into a Weakly-Stationary one | transformSeries |
| transformSeries | transformSeries,Trajectories-method transformSeries-methods |
| Class '"TransTrajectories"' | TransTrajectories-class |
