Package: deltaGseg 1.53.0

Diana Low

deltaGseg: deltaGseg

Identifying distinct subpopulations through multiscale time series analysis

Authors:Diana Low, Efthymios Motakis

deltaGseg_1.53.0.tar.gz
deltaGseg_1.53.0.zip(r-4.7)deltaGseg_1.53.0.zip(r-4.6)deltaGseg_1.53.0.zip(r-4.5)
deltaGseg_1.53.0.tgz(r-4.6-any)deltaGseg_1.53.0.tgz(r-4.5-any)
deltaGseg_1.53.0.tar.gz(r-4.7-any)deltaGseg_1.53.0.tar.gz(r-4.6-any)
deltaGseg_1.53.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
deltaGseg/json (API)

# Install 'deltaGseg' in R:

install.packages('deltaGseg', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

pvals - Pvalues data
simtraj - Sample trajectory series
simtraj.tr - Sample trajectory series
simtraj.tr2 - Sample trajectory series
traj1 - Sample trajectory series
traj1.denoise - Sample trajectory series
traj1.ss - Sample trajectory series
traj1.tr - Sample trajectory series

On BioConductor:deltaGseg-1.53.0(bioc 3.24)deltaGseg-1.52.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

proteomics timecourse visualization clustering

3.30 score 2 scripts 17 exports 39 dependencies

Last updated from:5a590458eb. Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	154
linux-devel-x86_64	WARNING	234
source / vignettes	OK	203
linux-release-x86_64	WARNING	231
macos-release-arm64	WARNING	127
macos-oldrel-arm64	WARNING	129
windows-devel	WARNING	172
windows-release	WARNING	167
windows-oldrel	WARNING	183
wasm-release	OK	142

Exports:chooseBreaks clusterPV clusterSegments denoiseSegments diagnosticPlots getAVD getBreaks getIntervals getSegments getTNames getTraj parseTraj plot plotDiff show splitTraj transformSeries

Dependencies:changepoint cli cpp11 curl farver fBasics ggplot2 glue gss gtable isoband jsonlite labeling lattice lifecycle MASS plyr pvclust quadprog quantmod R6 RColorBrewer Rcpp reshape rlang S7 scales spatial stabledist timeDate timeSeries tseries TTR vctrs viridisLite wavethresh withr xts zoo

deltaGseg

Introduction | Installing and loading the deltaGseg package | Using deltaGseg | Appendix | References

Rendered fromdeltaGseg.Rnwusingknitr

Last update: 2018-08-30
Started: 2013-11-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Choose a given number of breakpoints in a set of trajectories.	chooseBreaks
chooseBreaks	chooseBreaks,list,numeric-method chooseBreaks-methods
clusterPV	clusterPV
clusterPV	clusterPV,SegTrajectories-method clusterPV-methods
clusterSegments	clusterSegments
clusterSegments	clusterSegments,SegTrajectories-method clusterSegments-methods
deltaGseg	deltaGseg
Wavelet denoising of trajectory series (segments)	denoiseSegments
denoiseSegments	denoiseSegments,Trajectories-method denoiseSegments,TransTrajectories-method denoiseSegments-methods
diagnosticPlots	diagnosticPlots
diagnosticPlots	diagnosticPlots,SegSeriesTrajectories-method diagnosticPlots-methods
getAVD	getAVD
'getAVD'	getAVD,Trajectories-method getAVD,TransTrajectories-method getAVD-methods
getBreaks	getBreaks
getBreaks	getBreaks,TransTrajectories-method getBreaks-methods
getIntervals	getIntervals
getIntervals	getIntervals,SegSeriesTrajectories-method getIntervals-methods
getSegments	getSegments
getSegments	getSegments,SegSeriesTrajectories-method getSegments,SegTrajectories-method getSegments-methods
getTNames	getTNames
Retrieve filenames of trajectories	getTNames,Trajectories-method getTNames,TransTrajectories-method getTNames-methods
getTraj	getTraj
getTrajectories	getTraj,Trajectories-method getTraj,TransTrajectories-method getTraj-methods
Reads in files containing trajectory data	parseTraj
Plot Trajectories-related objects	plot plot,SegSeriesTrajectories-method plot,SegTrajectories-method plot,Trajectories-method plot,TransTrajectories-method plot-methods
plotDiff	plotDiff
plotDiff	plotDiff,TransTrajectories-method plotDiff-methods
pvalues data	pvals
Class '"SegSeriesTrajectories"'	SegSeriesTrajectories-class
Class '"SegTrajectories"'	SegTrajectories-class
~~ Methods for Function 'show' ~~	show,SegSeriesTrajectories-method show,SegTrajectories-method show,Trajectories-method show,TransTrajectories-method show-methods
Sample trajectory series	simtraj
Sample trajectory series	simtraj.tr
Sample trajectory series	simtraj.tr2
Identify Breakpoints in a Trajectory	splitTraj
splitTraj	splitTraj,Trajectories-method splitTraj-methods
Sample trajectory series	traj1
Sample trajectory series	traj1.denoise
Sample trajectory series	traj1.ss
Sample trajectory series	traj1.tr
Class '"Trajectories"'	Trajectories-class
Transforms a Non-Stationary Series into a Weakly-Stationary one	transformSeries
transformSeries	transformSeries,Trajectories-method transformSeries-methods
Class '"TransTrajectories"'	TransTrajectories-class