Package: deltaGseg 1.53.0

Diana Low

deltaGseg: deltaGseg

Identifying distinct subpopulations through multiscale time series analysis

Authors:Diana Low, Efthymios Motakis

deltaGseg_1.53.0.tar.gz
deltaGseg_1.53.0.zip(r-4.7)deltaGseg_1.53.0.zip(r-4.6)deltaGseg_1.53.0.zip(r-4.5)
deltaGseg_1.53.0.tgz(r-4.6-any)deltaGseg_1.53.0.tgz(r-4.5-any)
deltaGseg_1.53.0.tar.gz(r-4.7-any)deltaGseg_1.53.0.tar.gz(r-4.6-any)
deltaGseg_1.53.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
deltaGseg/json (API)
NEWS

# Install 'deltaGseg' in R:
install.packages('deltaGseg', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:deltaGseg-1.53.0(bioc 3.24)deltaGseg-1.52.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

proteomicstimecoursevisualizationclustering

3.30 score 2 scripts 399 downloads 17 exports 39 dependencies

Last updated from:5a590458eb. Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR154
linux-devel-x86_64WARNING267
source / vignettesOK199
linux-release-x86_64WARNING233
macos-release-arm64WARNING189
macos-oldrel-arm64WARNING129
windows-develWARNING169
windows-releaseWARNING166
windows-oldrelWARNING168
wasm-releaseOK114

Exports:chooseBreaksclusterPVclusterSegmentsdenoiseSegmentsdiagnosticPlotsgetAVDgetBreaksgetIntervalsgetSegmentsgetTNamesgetTrajparseTrajplotplotDiffshowsplitTrajtransformSeries

Dependencies:changepointclicpp11curlfarverfBasicsggplot2gluegssgtableisobandjsonlitelabelinglatticelifecycleMASSplyrpvclustquadprogquantmodR6RColorBrewerRcppreshaperlangS7scalesspatialstabledisttimeDatetimeSeriestseriesTTRvctrsviridisLitewavethreshwithrxtszoo

deltaGseg

Rendered fromdeltaGseg.Rnwusingknitron May 28 2026.

Last update: 2018-08-30
Started: 2013-11-01

Readme and manuals

Help Manual

Help pageTopics
Choose a given number of breakpoints in a set of trajectories.chooseBreaks
chooseBreakschooseBreaks,list,numeric-method chooseBreaks-methods
clusterPVclusterPV
clusterPVclusterPV,SegTrajectories-method clusterPV-methods
clusterSegmentsclusterSegments
clusterSegmentsclusterSegments,SegTrajectories-method clusterSegments-methods
deltaGsegdeltaGseg
Wavelet denoising of trajectory series (segments)denoiseSegments
denoiseSegmentsdenoiseSegments,Trajectories-method denoiseSegments,TransTrajectories-method denoiseSegments-methods
diagnosticPlotsdiagnosticPlots
diagnosticPlotsdiagnosticPlots,SegSeriesTrajectories-method diagnosticPlots-methods
getAVDgetAVD
'getAVD'getAVD,Trajectories-method getAVD,TransTrajectories-method getAVD-methods
getBreaksgetBreaks
getBreaksgetBreaks,TransTrajectories-method getBreaks-methods
getIntervalsgetIntervals
getIntervalsgetIntervals,SegSeriesTrajectories-method getIntervals-methods
getSegmentsgetSegments
getSegmentsgetSegments,SegSeriesTrajectories-method getSegments,SegTrajectories-method getSegments-methods
getTNamesgetTNames
Retrieve filenames of trajectoriesgetTNames,Trajectories-method getTNames,TransTrajectories-method getTNames-methods
getTrajgetTraj
getTrajectoriesgetTraj,Trajectories-method getTraj,TransTrajectories-method getTraj-methods
Reads in files containing trajectory dataparseTraj
Plot Trajectories-related objectsplot plot,SegSeriesTrajectories-method plot,SegTrajectories-method plot,Trajectories-method plot,TransTrajectories-method plot-methods
plotDiffplotDiff
plotDiffplotDiff,TransTrajectories-method plotDiff-methods
pvalues datapvals
Class '"SegSeriesTrajectories"'SegSeriesTrajectories-class
Class '"SegTrajectories"'SegTrajectories-class
~~ Methods for Function 'show' ~~show,SegSeriesTrajectories-method show,SegTrajectories-method show,Trajectories-method show,TransTrajectories-method show-methods
Sample trajectory seriessimtraj
Sample trajectory seriessimtraj.tr
Sample trajectory seriessimtraj.tr2
Identify Breakpoints in a TrajectorysplitTraj
splitTrajsplitTraj,Trajectories-method splitTraj-methods
Sample trajectory seriestraj1
Sample trajectory seriestraj1.denoise
Sample trajectory seriestraj1.ss
Sample trajectory seriestraj1.tr
Class '"Trajectories"'Trajectories-class
Transforms a Non-Stationary Series into a Weakly-Stationary onetransformSeries
transformSeriestransformSeries,Trajectories-method transformSeries-methods
Class '"TransTrajectories"'TransTrajectories-class