Package: deltaGseg 1.53.0
Diana Low
deltaGseg: deltaGseg
Identifying distinct subpopulations through multiscale time series analysis
Authors:
deltaGseg_1.53.0.tar.gz
deltaGseg_1.53.0.zip(r-4.7)deltaGseg_1.53.0.zip(r-4.6)deltaGseg_1.53.0.zip(r-4.5)
deltaGseg_1.53.0.tgz(r-4.6-any)deltaGseg_1.53.0.tgz(r-4.5-any)
deltaGseg_1.53.0.tar.gz(r-4.7-any)deltaGseg_1.53.0.tar.gz(r-4.6-any)
deltaGseg_1.53.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
deltaGseg/json (API)
| # Install 'deltaGseg' in R: |
| install.packages('deltaGseg', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- pvals - Pvalues data
- simtraj - Sample trajectory series
- simtraj.tr - Sample trajectory series
- simtraj.tr2 - Sample trajectory series
- traj1 - Sample trajectory series
- traj1.denoise - Sample trajectory series
- traj1.ss - Sample trajectory series
- traj1.tr - Sample trajectory series
On BioConductor:deltaGseg-1.53.0(bioc 3.24)deltaGseg-1.52.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
proteomicstimecoursevisualizationclustering
Last updated from:5a590458eb. Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 154 | ||
| linux-devel-x86_64 | WARNING | 267 | ||
| source / vignettes | OK | 199 | ||
| linux-release-x86_64 | WARNING | 233 | ||
| macos-release-arm64 | WARNING | 189 | ||
| macos-oldrel-arm64 | WARNING | 129 | ||
| windows-devel | WARNING | 169 | ||
| windows-release | WARNING | 166 | ||
| windows-oldrel | WARNING | 168 | ||
| wasm-release | OK | 114 |
Exports:chooseBreaksclusterPVclusterSegmentsdenoiseSegmentsdiagnosticPlotsgetAVDgetBreaksgetIntervalsgetSegmentsgetTNamesgetTrajparseTrajplotplotDiffshowsplitTrajtransformSeries
Dependencies:changepointclicpp11curlfarverfBasicsggplot2gluegssgtableisobandjsonlitelabelinglatticelifecycleMASSplyrpvclustquadprogquantmodR6RColorBrewerRcppreshaperlangS7scalesspatialstabledisttimeDatetimeSeriestseriesTTRvctrsviridisLitewavethreshwithrxtszoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Choose a given number of breakpoints in a set of trajectories. | chooseBreaks |
| chooseBreaks | chooseBreaks,list,numeric-method chooseBreaks-methods |
| clusterPV | clusterPV |
| clusterPV | clusterPV,SegTrajectories-method clusterPV-methods |
| clusterSegments | clusterSegments |
| clusterSegments | clusterSegments,SegTrajectories-method clusterSegments-methods |
| deltaGseg | deltaGseg |
| Wavelet denoising of trajectory series (segments) | denoiseSegments |
| denoiseSegments | denoiseSegments,Trajectories-method denoiseSegments,TransTrajectories-method denoiseSegments-methods |
| diagnosticPlots | diagnosticPlots |
| diagnosticPlots | diagnosticPlots,SegSeriesTrajectories-method diagnosticPlots-methods |
| getAVD | getAVD |
| 'getAVD' | getAVD,Trajectories-method getAVD,TransTrajectories-method getAVD-methods |
| getBreaks | getBreaks |
| getBreaks | getBreaks,TransTrajectories-method getBreaks-methods |
| getIntervals | getIntervals |
| getIntervals | getIntervals,SegSeriesTrajectories-method getIntervals-methods |
| getSegments | getSegments |
| getSegments | getSegments,SegSeriesTrajectories-method getSegments,SegTrajectories-method getSegments-methods |
| getTNames | getTNames |
| Retrieve filenames of trajectories | getTNames,Trajectories-method getTNames,TransTrajectories-method getTNames-methods |
| getTraj | getTraj |
| getTrajectories | getTraj,Trajectories-method getTraj,TransTrajectories-method getTraj-methods |
| Reads in files containing trajectory data | parseTraj |
| Plot Trajectories-related objects | plot plot,SegSeriesTrajectories-method plot,SegTrajectories-method plot,Trajectories-method plot,TransTrajectories-method plot-methods |
| plotDiff | plotDiff |
| plotDiff | plotDiff,TransTrajectories-method plotDiff-methods |
| pvalues data | pvals |
| Class '"SegSeriesTrajectories"' | SegSeriesTrajectories-class |
| Class '"SegTrajectories"' | SegTrajectories-class |
| ~~ Methods for Function 'show' ~~ | show,SegSeriesTrajectories-method show,SegTrajectories-method show,Trajectories-method show,TransTrajectories-method show-methods |
| Sample trajectory series | simtraj |
| Sample trajectory series | simtraj.tr |
| Sample trajectory series | simtraj.tr2 |
| Identify Breakpoints in a Trajectory | splitTraj |
| splitTraj | splitTraj,Trajectories-method splitTraj-methods |
| Sample trajectory series | traj1 |
| Sample trajectory series | traj1.denoise |
| Sample trajectory series | traj1.ss |
| Sample trajectory series | traj1.tr |
| Class '"Trajectories"' | Trajectories-class |
| Transforms a Non-Stationary Series into a Weakly-Stationary one | transformSeries |
| transformSeries | transformSeries,Trajectories-method transformSeries-methods |
| Class '"TransTrajectories"' | TransTrajectories-class |
