Package: decontam 1.25.0

Benjamin Callahan

decontam: Identify Contaminants in Marker-gene and Metagenomics Sequencing Data

Simple statistical identification of contaminating sequence features in marker-gene or metagenomics data. Works on any kind of feature derived from environmental sequencing data (e.g. ASVs, OTUs, taxonomic groups, MAGs,...). Requires DNA quantitation data or sequenced negative control samples.

Authors:Benjamin Callahan [aut, cre], Nicole Marie Davis [aut], Felix G.M. Ernst [ctb]

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Bug tracker:https://github.com/benjjneb/decontam/issues

On BioConductor:decontam-1.25.0(bioc 3.20)decontam-1.24.0(bioc 3.19)

bioconductor-package

4 exports 2.31 score 33 dependencies 7 dependents 76 mentions

Last updated 2 months agofrom:bec1570187

Exports:isContaminantisNotContaminantplot_conditionplot_frequency

Dependencies:clicolorspacefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrR6RColorBrewerRcppreshape2rlangscalesstringistringrtibbleutf8vctrsviridisLitewithr