Package: dagLogo 1.43.0
Jianhong Ou
dagLogo: dagLogo: a Bioconductor package for visualizing conserved amino acid sequence pattern in groups based on probability theory
Visualize significant conserved amino acid sequence pattern in groups based on probability theory.
Authors:
dagLogo_1.43.0.tar.gz
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dagLogo.pdf |dagLogo.html✨
dagLogo/json (API)
NEWS
| # Install 'dagLogo' in R: |
| install.packages('dagLogo', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- ecoli.proteome - An object of 'Proteome-class' representing the _Escherichia coli_ proteome.
- proteome.example - An object of 'Proteome-class' representing the subset of _Drosophila melanogaster_ proteome.
- seq.example - An object of 'dagPeptides-class' representing acetylated lysine-containing peptides.
On BioConductor:dagLogo-1.43.0(bioc 3.20)dagLogo-1.42.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:cce62f37b3
Exports:addSchemeavailableSchemesbuildBackgroundModelcleanPeptidescolorsetsdagHeatmapdagLogofetchSequenceformatSequencegetGroupingSymbolprepareProteomeprepareProteomeByFTPprepareProteomeByUniProtWStestDAU
Dependencies:abindade4annotateAnnotationDbiaskpassbase64encBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocParallelbiomaRtBiostringsbitbit64bitopsblobBSgenomebslibcachemcaToolsclicliprCNErcodetoolscolorspacecpp11crayoncurlDBIdbplyrDelayedArraydigestDirichletMultinomialdplyrevaluatefansifarverfastmapfilelockfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesggplot2glueGO.dbgtablegtoolshighrhmshtmltoolshtmlwidgetshttpcachehttrhttr2IRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemotifStackmunsellnlmeopensslpheatmappillarpixmappkgconfigplogrplyrpngpoweRlawpracmaprettyunitsprogresspurrrpwalignR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRcppArmadilloRCurlreadrreshape2restfulrRhtslibrjsonrjsonconsrlangrmarkdownRsamtoolsRSQLitertracklayerS4ArraysS4VectorssassscalesseqLogosnowspSparseArraystringistringrSummarizedExperimentsysTFBSToolsTFMPvaluetibbletidyrtidyselecttinytextzdbUCSC.utilsUniProt.wsutf8vctrsviridisLitevroomwithrxfunXMLxml2xtableXVectoryamlzlibbioc
