Package: dStruct 1.19.0

Krishna Choudhary

dStruct: Identifying differentially reactive regions from RNA structurome profiling data

dStruct identifies differentially reactive regions from RNA structurome profiling data. dStruct is compatible with a broad range of structurome profiling technologies, e.g., SHAPE-MaP, DMS-MaPseq, Structure-Seq, SHAPE-Seq, etc. See Choudhary et al., Genome Biology, 2019 for the underlying method.

Authors:Krishna Choudhary [aut, cre], Sharon Aviran [aut]

dStruct_1.19.0.tar.gz
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dStruct_1.19.0.tgz(r-4.6-any)dStruct_1.19.0.tgz(r-4.5-any)
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manual.pdf |manual.html✨
card.svg |card.png
dStruct/json (API)
NEWS

# Install 'dStruct' in R:
install.packages('dStruct', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/datamaster-kris/dstruct/issues

Datasets:
  • lai2019 - _Saccharomyces cerevisiae_ Structure-seq data
  • wan2014 - _Homo sapiens_ PARS data

On BioConductor:dStruct-1.19.0(bioc 3.24)dStruct-1.18.0(bioc 3.23)

statisticalmethodstructuralpredictionsequencingsoftware

5.18 score 3 stars 17 scripts 296 downloads 3 mentions 11 exports 30 dependencies

Last updated from:952c5900dc. Checks:6 NOTE, 2 ERROR, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE165
linux-devel-x86_64ERROR221
source / vignettesOK216
linux-release-x86_64NOTE254
macos-release-arm64NOTE114
macos-oldrel-arm64NOTE104
windows-develERROR102
windows-releaseNOTE138
windows-oldrelNOTE124
wasm-releaseOK126

Exports:calcDisdCombsdStructdStructGuideddStructomegetCombsgetContigRegionsgetRegionsnormalizerplotDStructurometwoEightNormalize

Dependencies:BiocGenericsclicpp11farvergenericsggplot2gluegtableIRangesisobandlabelinglatticelifecyclemagrittrplyrpurrrR6RColorBrewerRcppreshape2rlangS4VectorsS7scalesstringistringrvctrsviridisLitewithrzoo

Differential RNA structurome analysis using dStruct

Krishna Choudhary, Sharon Aviran

Rendered fromdStruct.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2021-05-23
Started: 2021-02-18