Package: dStruct 1.19.0

Krishna Choudhary

dStruct: Identifying differentially reactive regions from RNA structurome profiling data

dStruct identifies differentially reactive regions from RNA structurome profiling data. dStruct is compatible with a broad range of structurome profiling technologies, e.g., SHAPE-MaP, DMS-MaPseq, Structure-Seq, SHAPE-Seq, etc. See Choudhary et al., Genome Biology, 2019 for the underlying method.

Authors:Krishna Choudhary [aut, cre], Sharon Aviran [aut]

dStruct_1.19.0.tar.gz
dStruct_1.19.0.zip(r-4.7)dStruct_1.19.0.zip(r-4.6)dStruct_1.19.0.zip(r-4.5)
dStruct_1.19.0.tgz(r-4.6-any)dStruct_1.19.0.tgz(r-4.5-any)
dStruct_1.19.0.tar.gz(r-4.7-any)dStruct_1.19.0.tar.gz(r-4.6-any)
dStruct_1.19.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
dStruct/json (API)

# Install 'dStruct' in R:
install.packages('dStruct', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/datamaster-kris/dstruct/issues

Datasets:
  • lai2019 - _Saccharomyces cerevisiae_ Structure-seq data
  • wan2014 - _Homo sapiens_ PARS data

On BioConductor:dStruct-1.19.0(bioc 3.24)dStruct-1.18.0(bioc 3.23)

statisticalmethodstructuralpredictionsequencingsoftware

4.03 score 3 stars 12 scripts 3 mentions 11 exports 30 dependencies

Last updated from:952c5900dc. Checks:1 NOTE, 3 ERROR, 5 WARNING, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE169
linux-devel-x86_64ERROR218
source / vignettesERROR227
linux-release-x86_64WARNING220
macos-release-arm64WARNING117
macos-oldrel-arm64WARNING108
windows-develERROR90
windows-releaseWARNING118
windows-oldrelWARNING123
wasm-releaseOK158

Exports:calcDisdCombsdStructdStructGuideddStructomegetCombsgetContigRegionsgetRegionsnormalizerplotDStructurometwoEightNormalize

Dependencies:BiocGenericsclicpp11farvergenericsggplot2gluegtableIRangesisobandlabelinglatticelifecyclemagrittrplyrpurrrR6RColorBrewerRcppreshape2rlangS4VectorsS7scalesstringistringrvctrsviridisLitewithrzoo