To cite the dStruct package in publications use:

  Choudhary, K., Lai, YH., Tran, E. J., Aviran, S. dStruct: identifying
  differentially reactive regions from RNA structurome profiling data.
  Genome Biology, 20, 40 (2019).
  https://doi.org/10.1186/s13059-019-1641-3

A BibTeX entry for LaTeX users is

  @Article{,
    title = {dStruct: identifying differentially reactive regions from RNA structurome profiling data},
    author = {Krishna Choudhary and Yu-Hsuan Lai and Elizabeth J. Tran and Sharon Aviran},
    year = {2019},
    volume = {20},
    number = {40},
    url = {https://doi.org/10.1186/s13059-019-1641-3},
    journal = {Genome Biology},
  }