Package: cytoviewer 1.13.0

Lasse Meyer

cytoviewer: An interactive multi-channel image viewer for R

This R package supports interactive visualization of multi-channel images and segmentation masks generated by imaging mass cytometry and other highly multiplexed imaging techniques using shiny. The cytoviewer interface is divided into image-level (Composite and Channels) and cell-level visualization (Masks). It allows users to overlay individual images with segmentation masks, integrates well with SingleCellExperiment and SpatialExperiment objects for metadata visualization and supports image downloads.

Authors:Lasse Meyer [aut, cre], Nils Eling [aut]

cytoviewer_1.13.0.tar.gz
cytoviewer_1.13.0.zip(r-4.7)cytoviewer_1.13.0.zip(r-4.6)cytoviewer_1.13.0.zip(r-4.5)
cytoviewer_1.13.0.tgz(r-4.6-any)cytoviewer_1.13.0.tgz(r-4.5-any)
cytoviewer_1.13.0.tar.gz(r-4.7-any)cytoviewer_1.13.0.tar.gz(r-4.6-any)
cytoviewer_1.13.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
cytoviewer/json (API)
NEWS

# Install 'cytoviewer' in R:

install.packages('cytoviewer', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bodenmillergroup/cytoviewer/issues

On BioConductor:cytoviewer-1.13.0(bioc 3.24)cytoviewer-1.12.0(bioc 3.23)

immunooncology software singlecell onechannel twochannel multichannel spatial dataimport bioconductor imaging shiny visualization

6.23 score 7 stars 54 scripts 360 downloads 1 exports 136 dependencies

Last updated from:6b2c61fd59. Checks:1 NOTE, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	227
linux-devel-x86_64	OK	444
source / vignettes	OK	327
linux-release-x86_64	OK	414
macos-release-arm64	OK	271
macos-oldrel-arm64	OK	289
windows-devel	OK	408
windows-release	OK	391
windows-oldrel	OK	382
wasm-release	OK	199