Package: cytoviewer 1.7.0

Lasse Meyer

cytoviewer: An interactive multi-channel image viewer for R

This R package supports interactive visualization of multi-channel images and segmentation masks generated by imaging mass cytometry and other highly multiplexed imaging techniques using shiny. The cytoviewer interface is divided into image-level (Composite and Channels) and cell-level visualization (Masks). It allows users to overlay individual images with segmentation masks, integrates well with SingleCellExperiment and SpatialExperiment objects for metadata visualization and supports image downloads.

Authors:Lasse Meyer [aut, cre], Nils Eling [aut]

cytoviewer_1.7.0.tar.gz
cytoviewer_1.7.0.zip(r-4.5)cytoviewer_1.7.0.zip(r-4.4)cytoviewer_1.7.0.zip(r-4.3)
cytoviewer_1.7.0.tgz(r-4.4-any)cytoviewer_1.7.0.tgz(r-4.3-any)
cytoviewer_1.7.0.tar.gz(r-4.5-noble)cytoviewer_1.7.0.tar.gz(r-4.4-noble)
cytoviewer_1.7.0.tgz(r-4.4-emscripten)cytoviewer_1.7.0.tgz(r-4.3-emscripten)
cytoviewer.pdf |cytoviewer.html✨
cytoviewer/json (API)
NEWS

# Install 'cytoviewer' in R:

install.packages('cytoviewer', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bodenmillergroup/cytoviewer/issues

On BioConductor:cytoviewer-1.5.0(bioc 3.20)cytoviewer-1.4.0(bioc 3.19)

immunooncology software singlecell onechannel twochannel multichannel spatial dataimport bioconductor imaging shiny visualization

5.43 score 5 stars 12 scripts 209 downloads 1 exports 141 dependencies

Last updated 23 days agofrom:43409c7faf. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Oct 30 2024
R-4.5-win	OK	Oct 30 2024
R-4.5-linux	OK	Oct 30 2024
R-4.4-win	OK	Oct 30 2024
R-4.4-mac	OK	Oct 31 2024
R-4.3-win	OK	Oct 30 2024
R-4.3-mac	OK	Oct 31 2024