Package: cytoviewer 1.5.0

Lasse Meyer

cytoviewer: An interactive multi-channel image viewer for R

This R package supports interactive visualization of multi-channel images and segmentation masks generated by imaging mass cytometry and other highly multiplexed imaging techniques using shiny. The cytoviewer interface is divided into image-level (Composite and Channels) and cell-level visualization (Masks). It allows users to overlay individual images with segmentation masks, integrates well with SingleCellExperiment and SpatialExperiment objects for metadata visualization and supports image downloads.

Authors:Lasse Meyer [aut, cre], Nils Eling [aut]

cytoviewer_1.5.0.tar.gz
cytoviewer_1.5.0.zip(r-4.5)cytoviewer_1.5.0.zip(r-4.4)cytoviewer_1.5.0.zip(r-4.3)
cytoviewer_1.5.0.tgz(r-4.4-any)cytoviewer_1.5.0.tgz(r-4.3-any)
cytoviewer_1.5.0.tar.gz(r-4.5-noble)cytoviewer_1.5.0.tar.gz(r-4.4-noble)
cytoviewer_1.5.0.tgz(r-4.4-emscripten)cytoviewer_1.5.0.tgz(r-4.3-emscripten)
cytoviewer.pdf |cytoviewer.html✨
cytoviewer/json (API)
NEWS

# Install 'cytoviewer' in R:
install.packages('cytoviewer', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/bodenmillergroup/cytoviewer/issues

On BioConductor:cytoviewer-1.5.0(bioc 3.20)cytoviewer-1.4.0(bioc 3.19)

bioconductor-package

1 exports 1.16 score 141 dependencies

Last updated 15 days agofrom:86721b2f87

Exports:cytoviewer

Dependencies:abindarchiveaskpassbase64encbeeswarmBHBiobaseBiocFileCacheBiocGenericsBiocParallelbitbit64bitopsblobbslibcachemclicodetoolscolorspacecolourpickercommonmarkcpp11crayoncurlcytomapperDBIdbplyrDelayedArraydigestdplyrEBImageevaluatefansifarverfastmapfftwtoolsfilelockfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggbeeswarmggplot2gluegridExtragtableHDF5ArrayhighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobandjpegjquerylibjsonliteknitrlabelinglambda.rlaterlatticelifecyclelocfitmagickmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeminiUImunsellnlmennlsopensslpillarpkgconfigplogrpngpromisespurrrR6rappdirsrasterRColorBrewerRcppRCurlrhdf5rhdf5filtersRhdf5librjsonrlangrmarkdownRSQLiteS4ArraysS4VectorssassscalesshinyshinycssloadersshinydashboardshinyjsSingleCellExperimentsnowsourcetoolsspSparseArraySpatialExperimentstringistringrSummarizedExperimentsvglitesvgPanZoomsyssystemfontsterratibbletidyrtidyselecttifftinytexUCSC.utilsutf8vctrsviporviridisviridisLitewithrxfunxtableXVectoryamlzlibbioc

cytoviewer - Interactive multi-channel image visualization in R

Lasse Meyer, Nils Eling

Rendered fromcytoviewer.Rmdusingknitr::rmarkdownon Jun 26 2024.

Last update: 2023-10-05
Started: 2023-03-23