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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "cytoviewer" in publications use:'
type: software
license: GPL-3.0-only
title: 'cytoviewer: An interactive multi-channel image viewer for R'
version: 1.5.0
doi: doi.org/10.1186/s12859-023-05546-z
identifiers:
- type: doi
  value: 10.32614/CRAN.package.cytoviewer
abstract: This R package supports interactive visualization of multi-channel images
  and segmentation masks generated by imaging mass cytometry and other highly multiplexed
  imaging techniques using shiny. The cytoviewer interface is divided into image-level
  (Composite and Channels) and cell-level visualization (Masks). It allows users to
  overlay individual images with segmentation masks, integrates well with SingleCellExperiment
  and SpatialExperiment objects for metadata visualization and supports image downloads.
authors:
- family-names: Meyer
  given-names: Lasse
  email: lasse.meyer@dqbm.uzh.ch
  orcid: https://orcid.org/0000-0002-1660-1199
- family-names: Eling
  given-names: Nils
  email: nils.eling@dqbm.uzh.ch
  orcid: https://orcid.org/0000-0002-4711-1176
preferred-citation:
  type: article
  title: 'cytoviewer: an R/Bioconductor package for interactive visualization and
    exploration of highly multiplexed imaging data'
  authors:
  - family-names: Meyer
    given-names: Lasse
    email: lasse.meyer@dqbm.uzh.ch
    orcid: https://orcid.org/0000-0002-1660-1199
  - family-names: Eling
    given-names: Nils
    email: nils.eling@dqbm.uzh.ch
    orcid: https://orcid.org/0000-0002-4711-1176
  - family-names: Bodenmiller
    given-names: Bernd
  year: '2024'
  journal: BMC Bioinformatics
  doi: doi.org/10.1186/s12859-023-05546-z
repository: https://bioc.r-universe.dev
repository-code: https://github.com/BodenmillerGroup/cytoviewer
commit: 86721b2f872fd8f8c9d44930698b07d495868dbd
url: https://github.com/BodenmillerGroup/cytoviewer
contact:
- family-names: Meyer
  given-names: Lasse
  email: lasse.meyer@dqbm.uzh.ch
  orcid: https://orcid.org/0000-0002-1660-1199